Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1 165 1e-35 >seq1 Length=19924566 Score = 165 bits (182), Expect = 1e-35 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | || ||| | || |||||||| || || | || || |||| || | Sbjct 3528543 TGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAATG 3528484 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || ||||| | | | || ||| || ||| |||||||| |||||||| ||||||| Sbjct 3528483 ATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAAC 3528424 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||||||||| ||||||||||| || | ||| | |||||||||| | Sbjct 3528423 AAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAAACTCTTTCAGATTATAACA 3528364 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA 146265 | ||||||||||| || | |||||||| ||| ||||||||||||| | |||| Sbjct 3528363 TTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAAA 3528310 Score = 163 bits (180), Expect = 4e-35 Identities = 180/236 (76%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||| | || ||||| || ||||| | || || |||| || | Sbjct 4820972 TGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCAAATG 4820913 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || ||||| | | | ||| ||| || ||| |||||||| |||||||| ||||||| Sbjct 4820912 ATTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCTGATCAAC 4820853 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATA-ATAGA-ACGTTAACAGATTATAA 146209 ||||||| ||||||||||| ||||||||||| || | ||| || || |||||||||| Sbjct 4820852 AAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTT--CAGATTATAA 4820795 Query 146210 TATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA 146265 || ||||||||||| || | |||||||| ||| ||||||||||||| | |||| Sbjct 4820794 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAAA 4820739 Score = 163 bits (180), Expect = 4e-35 Identities = 180/236 (76%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||| | || ||||| || ||||| | || || |||| || | Sbjct 17036551 TGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCAAATG 17036610 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || ||||| | | | ||| ||| || ||| |||||||| |||||||| ||||||| Sbjct 17036611 ATTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCTGATCAAC 17036670 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATG-ATAATAGA-ACGTTAACAGATTATAA 146209 ||||||| ||||||||||| ||||||||||| | | | ||| || || |||||||||| Sbjct 17036671 AAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTT--CAGATTATAA 17036728 Query 146210 TATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA 146265 || ||||||||||| || | |||||||| ||| ||||||||||||| | |||| Sbjct 17036729 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAAA 17036784 Score = 161 bits (178), Expect = 2e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | || ||| | || |||||||| || || | || || |||| || | Sbjct 12568172 TGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAATG 12568231 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || ||||| | | | || ||| || ||| |||||||| |||||||| ||||||| Sbjct 12568232 ATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAAC 12568291 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||||||||| ||||||||||| || | || | |||||||||| | Sbjct 12568292 AAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAACA 12568351 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA 146265 | ||||||||||| || | |||||||| ||| ||||||||||||| | |||| Sbjct 12568352 TTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAAA 12568405 Score = 161 bits (178), Expect = 2e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | || ||| | || |||||||| || || | || || |||| || | Sbjct 12575058 TGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAATG 12575117 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || ||||| | | | || ||| || ||| |||||||| |||||||| ||||||| Sbjct 12575118 ATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAAC 12575177 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||||||||| ||||||||||| || | || | |||||||||| | Sbjct 12575178 AAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAACA 12575237 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA 146265 | ||||||||||| || | |||||||| ||| ||||||||||||| | |||| Sbjct 12575238 TTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAAA 12575291 Score = 161 bits (178), Expect = 2e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | || ||| | || |||||||| || || | || || |||| || | Sbjct 16561385 TGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAATG 16561326 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || ||||| | | | || ||| || ||| |||||||| |||||||| ||||||| Sbjct 16561325 ATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAAC 16561266 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||||||||| ||||||||||| || | || | |||||||||| | Sbjct 16561265 AAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAACA 16561206 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA 146265 | ||||||||||| || | |||||||| ||| ||||||||||||| | |||| Sbjct 16561205 TTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAAA 16561152 Score = 154 bits (170), Expect = 2e-32 Identities = 182/245 (74%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || ||||| || || || | || || |||| || | Sbjct 18441386 TGCAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACATTAGAAGTCGAACCAAATG 18441445 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| | | | ||| ||| || ||| |||||||| |||||||| ||||||| Sbjct 18441446 ACTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCAGATCAAC 18441505 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||||||||| ||||||||||| || | || | |||||||||| | Sbjct 18441506 AAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAACA 18441565 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG-TAAATAAATATTG 146270 | ||||||||||| || | |||||||| ||| ||||||||||||| || ||||| | Sbjct 18441566 TTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAAAATAATT 18441625 Query 146271 AAAAT 146275 ||||| Sbjct 18441626 AAAAT 18441630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786166390172920