Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 >seq1 Length=19924566 Score = 107 bits (118), Expect = 2e-18 Identities = 111/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 193450 AAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTATGATTTAT 193508 |||| || |||||||| | |||| || |||| | |||||||||| |||||||| |||| Sbjct 1821374 AAATTGGAGATAAATTCTCTTCAAGACATGGAC-AAAAAGGAACAGTTGGTATGACTTAT 1821432 Query 193509 TCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAATCCA 193568 |||||||||||||||||||||| | ||| || |||||| || ||||| || ||| Sbjct 1821433 AGACAAGAAGATATGCCATTTACAATTGAAGGAATTTCACCAGACATCATTATGAACCCA 1821492 Query 193569 AATTGTATTCCATCCAGAATGAC 193591 || ||||||||| | ||||| Sbjct 1821493 CATGCTATTCCATCTCGTATGAC 1821515 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 51867 ATGGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAA 51926 ||| |||| ||| |||| | || ||||| ||||| || | |||| | |||| Sbjct 10946687 ATGAATGGAGATTATGTTATTTTTAATAGACAACCTTCATTACATAGAATGAGTATGATG 10946746 Query 51927 AGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTGGCTATGACTAAA 51986 || |||||||| | || |||| | ||||||| ||||||||| | |||| | Sbjct 10946747 GGTCATAAAGTTAGAGTTTTACCATTTTCTACATTTAGAATGAATTTATGTGATACTACA 10946806 Query 51987 GCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGA 52046 | |||||||| ||||||||||| |||||||||||||| ||||| || ||| || || | Sbjct 10946807 CCTTATAATGCAGATTTTGATGGTGATGAAATGAATTTGCATGTACCACAAACACTTGAA 10946866 Query 52047 GCTACTGCTGAA 52058 || | |||||| Sbjct 10946867 GCAAGAGCTGAA 10946878 Score = 89.7 bits (98), Expect = 7e-13 Identities = 154/223 (69%), Gaps = 18/223 (8%) Strand=Plus/Minus Query 163135 TGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGCATCAAGATATATTTA 163194 ||||||||||||| | ||||||| |||||| |||||| || ||| ||||||||||||| Sbjct 14351896 TGGTCAATTTGGTTCAAGATTAGGAGGAGGCAAAGATCAAGCAGCAGCAAGATATATTTA 14351837 Query 163195 TACCAAACCAA-ATAAAATATTA--AAATATATATTTAGAGAAGAAGATGACCCTATTTT 163251 ||| || | || || ||||| | |||| ||| | |||| ||||||| || || Sbjct 14351836 TAC---ACGATTATCAAGTATTAGTAGATATTTATGTCCTAAAGATGATGACCAAATATT 14351780 Query 163252 AAATTATACTGTTGAGGG------------TGAACCTGTTCATTTTATCCCAGTGATTCC 163299 | | ||| | |||| | |||||| ||| | |||| | ||||| Sbjct 14351779 AGAATATCTTATTGATGAAGATAGAAGAATTGAACCAAAATATTATTTCCCTATTATTCC 14351720 Query 163300 ATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGATGG 163342 | | ||| ||||||| || ||||||||||||||||||| Sbjct 14351719 TACAGTATTAGTTAATGGAGCTGATGGTATTGGAACAGGATGG 14351677 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 193020 GGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGAAGACAGTATT 193079 || |||||||||||||||||| | ||| ||| | |||||||||||||| || ||| || Sbjct 1820941 GGAATTAATGCTATTGTTGCTGTTTGTTGTTATTCAGGTTATAATCAAGAGGATAGTGTT 1821000 Query 193080 ATTTTAAATAAAGCTTCTATTGAAAGAGGATTATT 193114 || | ||| ||| || ||||| ||||||||||| Sbjct 1821001 ATGATGAATCAAGGATCAATTGATAGAGGATTATT 1821035 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/188 (71%), Gaps = 13/188 (7%) Strand=Plus/Plus Query 51858 AGACAATTGATGGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCT 51917 ||||| | || ||| |||| ||| ||| |||||| ||||||||| | |||||| | Sbjct 9181825 AGACATGTTATTGATAATGATATGGTATTATCAAATAGACAACCAACATTACATAAACCA 9181884 Query 51918 TC---TATGCAAAGTT---TTAAAGT--TAAAATTCAACCAGTAAAAACATTTAAAATGA 51969 |||| | || ||||||| ||||| | || ||||||| || ||| Sbjct 9181885 GGAATTATGGGACATTATGTTAAAGTCTTAAAAAT-----AGAAAAAACAATTCGTATGC 9181939 Query 51970 ATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATG 52029 ||| |||| ||| ||| |||||| ||||||||||| |||||||||||||||||| Sbjct 9181940 ATTATGCTAATTGTAATACATTTAATGCAGATTTTGATGGAGATGAAATGAATTTACATC 9181999 Query 52030 TTCCTCAA 52037 |||| ||| Sbjct 9182000 TTCCACAA 9182007 Score = 86.0 bits (94), Expect = 8e-12 Identities = 156/226 (69%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 51838 AAGTTGGAGACTTGGTTAAAAGACAATTGATGGATGGTGATGATGTACTATTAAATAGGC 51897 || |||| || | ||| ||||||| || ||| |||| |||| |||| || || | Sbjct 11551723 AAATTGGTGATATTGTTGAAAGACATTTAGAAGATAATGATATTGTATTATTCAACAGAC 11551664 Query 51898 AACCAACACTTCATAAAGCTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAA 51957 |||| || | |||| | | ||| || || || ||||||| ||| | || Sbjct 11551663 AACCTTCATTGCATAGAATTAGTATTATGTGTCATAGAGCAAAAATTCTTCCATGGAGAA 11551604 Query 51958 CATT----TAAAATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGAT 52013 | || | ||||||| || |||| || |||||||||| ||||||||||| ||| Sbjct 11551603 CTTTACGTTTTAATGAATGTG--TATG--TACTCCATATAATGCAGATTTTGATGGAGAT 11551548 Query 52014 GAAATGAATTTACATGTTCCTCAATCATATGGAGCTACTGCTGAAT 52059 ||||||||||||||||| || ||| || | | ||| | ||||||| Sbjct 11551547 GAAATGAATTTACATGTGCCACAAACAGAAGAAGCAAGAGCTGAAT 11551502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635177592060280