Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq1 102 1e-16 >seq1 Length=19924566 Score = 102 bits (112), Expect = 1e-16 Identities = 110/143 (77%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 193003 AAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGGTATGATTTAT 193061 |||| || |||||||| | ||| || |||| | |||||||||| |||||||| |||| Sbjct 1821374 AAATTGGAGATAAATTCTCTTCAAGACATGGAC-AAAAAGGAACAGTTGGTATGACTTAT 1821432 Query 193062 TCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATTAATCCA 193121 ||||||||||||||||||||||| | ||| || |||||| || ||||| || ||| Sbjct 1821433 AGACAAGAAGATATGCCATTTACAATTGAAGGAATTTCACCAGACATCATTATGAACCCA 1821492 Query 193122 AATTGTATTCCGTCCAGAATGAC 193144 || |||||| || | ||||| Sbjct 1821493 CATGCTATTCCATCTCGTATGAC 1821515 Score = 100 bits (110), Expect = 4e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 50321 ATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGTT 50380 |||| ||| |||| | || ||||| ||||| || | |||| | |||| || Sbjct 10946691 ATGGAGATTATGTTATTTTTAATAGACAACCTTCATTACATAGAATGAGTATGATGGGTC 10946750 Query 50381 TTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTAGCTATGACTAAAGCAT 50440 |||||||| | || |||| | ||||||| |||||||||| | |||| | | | Sbjct 10946751 ATAAAGTTAGAGTTTTACCATTTTCTACATTTAGAATGAATTTATGTGATACTACACCTT 10946810 Query 50441 ATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAGCTA 50500 ||||||| ||||||||||| |||||||||||||| ||||| || ||| || || ||| | Sbjct 10946811 ATAATGCAGATTTTGATGGTGATGAAATGAATTTGCATGTACCACAAACACTTGAAGCAA 10946870 Query 50501 CTGCTGAA 50508 |||||| Sbjct 10946871 GAGCTGAA 10946878 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/188 (71%), Gaps = 13/188 (7%) Strand=Plus/Plus Query 50308 AGACAATTGATAGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCT 50367 ||||| | || ||| |||| ||| ||| |||||| ||||||||| | |||||| | Sbjct 9181825 AGACATGTTATTGATAATGATATGGTATTATCAAATAGACAACCAACATTACATAAACCA 9181884 Query 50368 TC---TATGCAAAGTT---TTAAAGT--TAAAATTCAACCAGTAAAAACATTTAAAATGA 50419 |||| | || ||||||| ||||| | || ||||||| || ||| Sbjct 9181885 GGAATTATGGGACATTATGTTAAAGTCTTAAAAAT-----AGAAAAAACAATTCGTATGC 9181939 Query 50420 ATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATG 50479 ||| |||| ||| ||| |||||| ||||||||||| |||||||||||||||||| Sbjct 9181940 ATTATGCTAATTGTAATACATTTAATGCAGATTTTGATGGAGATGAAATGAATTTACATC 9181999 Query 50480 TTCCTCAA 50487 |||| ||| Sbjct 9182000 TTCCACAA 9182007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628531192143360