Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1 183 6e-41 >seq1 Length=19924566 Score = 183 bits (202), Expect = 6e-41 Identities = 185/241 (77%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || | | ||||| || || || |||||||| || || |||||||| || Sbjct 3528318 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 3528377 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| || | || ||||||| ||||||||| ||||| || ||||||||||||||||| || Sbjct 3528378 AGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 3528437 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || ||||| ||||| || || | | ||||| | |||||| ||||| ||| Sbjct 3528438 ATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACT 3528497 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTTTC 82823 || || || || || || || || | ||||| |||||||| ||||| || | || ||| Sbjct 3528498 TCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATCGTTCTGTTATTC 3528557 Query 82824 T 82824 | Sbjct 3528558 T 3528558 Score = 178 bits (196), Expect = 3e-39 Identities = 184/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || | | ||||| || || || |||||||| || || |||||||| || Sbjct 12568397 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 12568338 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||||| ||||||||| ||||| || ||||||||||||||||| || Sbjct 12568337 AGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 12568278 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || ||||| ||||| || || | | ||||| | |||||| ||||| ||| Sbjct 12568277 ATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACT 12568218 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTTTC 82823 || || || || || || || || | ||||| |||||||| ||||| || | || ||| Sbjct 12568217 TCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATCGTTCTGTTATTC 12568158 Query 82824 T 82824 | Sbjct 12568157 T 12568157 Score = 178 bits (196), Expect = 3e-39 Identities = 184/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || | | ||||| || || || |||||||| || || |||||||| || Sbjct 12575283 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 12575224 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||||| ||||||||| ||||| || ||||||||||||||||| || Sbjct 12575223 AGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 12575164 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || ||||| ||||| || || | | ||||| | |||||| ||||| ||| Sbjct 12575163 ATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACT 12575104 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTTTC 82823 || || || || || || || || | ||||| |||||||| ||||| || | || ||| Sbjct 12575103 TCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATCGTTCTGTTATTC 12575044 Query 82824 T 82824 | Sbjct 12575043 T 12575043 Score = 178 bits (196), Expect = 3e-39 Identities = 184/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || | | ||||| || || || |||||||| || || |||||||| || Sbjct 16561160 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 16561219 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||||| ||||||||| ||||| || ||||||||||||||||| || Sbjct 16561220 AGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 16561279 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || ||||| ||||| || || | | ||||| | |||||| ||||| ||| Sbjct 16561280 ATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACT 16561339 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTTTC 82823 || || || || || || || || | ||||| |||||||| ||||| || | || ||| Sbjct 16561340 TCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATCGTTCTGTTATTC 16561399 Query 82824 T 82824 | Sbjct 16561400 T 16561400 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || | | ||||| || || || |||||||| || || |||||||| || Sbjct 18441611 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 18441552 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||||| ||||||||| ||||| || ||||||||||||||||| || Sbjct 18441551 AGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 18441492 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || ||||||||||| ||||| | | ||||| | ||||| ||||| ||| Sbjct 18441491 ATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAGTCATTTGGTTCGACT 18441432 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || ||||| || || | || || ||||| || |||||| Sbjct 18441431 TCTAATGTGATAGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCATT 18441384 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || | | ||||| || || || |||||||| || || |||||||| || Sbjct 4820747 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 4820806 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||||| |||||| || ||||| || |||||||||||||| || || Sbjct 4820807 AGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGGA 4820866 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || ||||||||||| ||||| | | ||||| | |||||| ||||| ||| Sbjct 4820867 ATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTCAACT 4820926 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || ||||| || || | ||||| ||||| || |||||| Sbjct 4820927 TCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATT 4820974 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || | | ||||| || || || |||||||| || || |||||||| || Sbjct 17036776 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 17036717 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||||| |||||| || ||||| || |||||||||||||| || || Sbjct 17036716 AGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGGA 17036657 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || ||||||||||| ||||| | | ||||| | |||||| ||||| ||| Sbjct 17036656 ATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTCAACT 17036597 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || ||||| || || | ||||| ||||| || |||||| Sbjct 17036596 TCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATT 17036549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981827187420339