Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1 140 8e-28 >seq1 Length=19924566 Score = 140 bits (154), Expect = 8e-28 Identities = 325/481 (68%), Gaps = 32/481 (7%) Strand=Plus/Plus Query 305015 AATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCTCAA 305074 ||||||||||||||| | ||||||||| ||| |||| || || |||| ||| | || Sbjct 10946405 AATCTAATGGGAAAAAGAGTTGATTTTTCTGCCAGAACAGTTATTTCACCAGATCC--AA 10946462 Query 305075 ATTAGTC--TTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACATTTCCAG 305132 ||| || | ||||| | ||||| |||| | | ||||| || |||||||||||| Sbjct 10946463 ATTTATCAATGGATGAAGTTGGAGTACCAACAGGAGTTGCTAAAATTTTAACATTTCCAG 10946522 Query 305133 AGAAAGTTAACGAGAAAAATATT-AAACATTTGAGACGTTGTGTTCTTAATGGAAATAGC 305191 | ||||| | | |||| ||| ||| ||| || ||| | ||||| | Sbjct 10946523 AAGTAGTTACTCAACATAATAAAGAAAAATTACAGAAATTA-GTTAGTGCTGGAATGAAT 10946581 Query 305192 AAGTATCCAGGTGCTCGTGCTGTTATAAAACACAAGCAAAAGAAGACAATATCTTTGAAC 305251 | |||||||| || | ||||| ||| |||||| | || Sbjct 10946582 GATTATCCAGGAGCATTTA-TGTTAGAAAG--------AAAGAATGG--------TCAAA 10946624 Query 305252 CATATCGATTTAAAACAATTCAGTAAAA-TGCTTGAAATTAATGATATTGTTATCAGACA 305310 ||||| |||| || | |||| |||| | |||| ||| |||| ||| ||| | Sbjct 10946625 CATATAGATTAAATGGA--TCAGAAAAAATTATTGATATTGGAGATACTGTGCATAGATA 10946682 Query 305311 TTTGAATGACAATG---ATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTC 305367 | | | ||| ||| ||| ||| | || ||||| ||||| ||| | |||| |||| Sbjct 10946683 TATTA-TGA--ATGGAGATTATGTTATTTTTAATAGACAACCTTCATTACATAGAATGAG 10946739 Query 305368 TATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGC 305427 |||||||| ||||||||| | ||| ||| | | |||||| || | ||| || ||| Sbjct 10946740 TATGATGGGTCATAAAGTTAGAGTTTTACCATTTTCTACATTTAGAATGAATTTATGTGA 10946799 Query 305428 TTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 | ||| ||||||||||| ||||||||||| |||||||||||| |||||||||| ||| | Sbjct 10946800 TACTACACCTTATAATGCAGATTTTGATGGTGATGAAATGAATTTGCATGTACCACAAAC 10946859 Query 305488 A 305488 | Sbjct 10946860 A 10946860 Score = 118 bits (130), Expect = 3e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 305286 AAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGC 305345 ||||| |||||||||| |||||||| | || |||||| || | ||||| || | Sbjct 11551723 AAATTGGTGATATTGTTGAAAGACATTTAGAAGATAATGATATTGTATTATTCAACAGAC 11551664 Query 305346 AACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATC-TGGATTG 305404 |||| ||| |||||| ||| ||| ||| ||||| || ||| | | | |||| Sbjct 11551663 AACCTTCATTGCATAGAATTAGTATTATGTGTCATAGAGCAAAAATTCTTCCATGGAGA- 11551605 Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || || || || |||| | ||| ||||| || |||||||| |||||||||||||||||| Sbjct 11551604 ACTTTACGTTTTAATGAATGTGTATGTACTCCATATAATGCAGATTTTGATGGAGATGAA 11551545 Query 305465 ATGAATATGCATGTACCTCAATCA 305488 |||||| | ||||| || ||| || Sbjct 11551544 ATGAATTTACATGTGCCACAAACA 11551521 Score = 96.9 bits (106), Expect = 8e-15 Identities = 795/1268 (63%), Gaps = 70/1268 (6%) Strand=Plus/Minus Query 279064 TGGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGC 279123 ||| ||||||||| | |||||||| || |||||| | || | |||| | Sbjct 14352916 TGGAATTCCAAAATTAGATGATGCTAATAAAGCTGGAACTAAAGAAGGAAATTTATGTAC 14352857 Query 279124 TTTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTAT 279183 ||| ||||||| || |||||||| ||| || || || | | || ||||||||| | Sbjct 14352856 ATTAATTCTTACAGAAGGAGATTCAGCTAAGACTTTAGCCGTATCAGGATTATCTGTTGT 14352797 Query 279184 TGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAA 279243 || | ||| | ||||| |||||||| |||||||| ||| | | |||||| | || Sbjct 14352796 AGGAAGAGATTATTATGGAGTATTTCCATTAAGAGGAAAACCATTAAATGCTAGAGA--- 14352740 Query 279244 AATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAATTTAAA 279303 ||| || || | || ||||||| | ||| |||||| ||| | Sbjct 14352739 AATAGCACCA----------TCAA--AAGTAAAAGAGAATCATGAATTTGAAAATATTGC 14352692 Query 279304 ACAAATATTGGGA-TTAGAGCAAGGTAAAAA--ATACAAAGATACATCAAGTTTACGATA 279360 | |||| ||||| ||||| | |||||| |||| || || || ||| |||| Sbjct 14352691 AAAAATTATGGGACTTAGAT-ATGGTAAAGTTTATACTTCAATTGATGAA--TTAAGATA 14352635 Query 279361 TGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATTAAT 279420 ||||| |||| || || |||| |||||||| ||||| || |||||||| ||| | Sbjct 14352634 TGGTAGTGTTATGATAATGGCAGATCAAGATTTTGATGGTTCACATATTAAAGGTTTACT 14352575 Query 279421 ACTTAATTGGGTTGATACTTTCTGGCCAGAATTGTTGAA---TCAAAATTTTGTAAGTGT 279477 | |||| | ||||||| ||||| ||| || || | | ||||| || || Sbjct 14352574 TATCAATTATTTCCATACTTTTTGGCCTTCATTATTAAAAATTGATAATTTCTTAGTTGA 14352515 Query 279478 GTTTCAAACACCAATTATTAAGGCAACTAAAGGTAAAAAAGAAGAAGT---ATTTTATTC 279534 ||| ||||||||| | || | |||| || ||| ||||| | ||| | | | Sbjct 14352514 ATTTATTACACCAATTGTCAAAGT---TAAACGTGGGAAACAAGAAATTTCATTCTTTAC 14352458 Query 279535 ATTGCAGAAGTTTGAACAATGGAAAGATTCAGTTGAGAATTCAGCC---TCATTCCATAC 279591 ||| | | ||| | ||||||||||| || |||||||| ||| | | | Sbjct 14352457 ATTACCACAATTTAATGAATGGAAAGATGCA----AGAATTCAAGAAGGTCAATTAAAAA 14352402 Query 279592 CAAG----------TATTTTAAAGGTTTAGCAACATCCAAT-ACTAAGGAAGCAAAAGAA 279640 | | |||| || ||| | | || || || ||| | | || |||| | Sbjct 14352401 AATGGGAAATTAAATATTACAAGGGTCTTGGTACTTCAAAAGACTCTG-ATGCTAAAGCA 14352343 Query 279641 TATTTTAAAAAA-TTAACACTTCAGAATTTTAA---TGCTAATGAGAAA------TCAAC 279690 ||||| | | || | || || || |||| ||| |||| | ||| Sbjct 14352342 TATTTCAGTGATCTTGATACA-CATAAAATTAAGTTTGCATATGATGGAGCTGGTTCAGA 14352284 Query 279691 TAATGCTCTTGATAAAGCTTTCAACAAATCTCGTGCTGATGATCGTAAAAACTGGTTGAG 279750 | | | | ||| ||| || || | | | || |||||||||||| | ||||| | Sbjct 14352283 TGAAGTAATAGATTTAGCATTTAATAGAAAAAGAGCAGATGATCGTAAAGAGTGGTTAAA 14352224 Query 279751 AAATTATGATAAGGATG-ATATAATTGATGAAGAACAAACTAATGTGACTTGTGAAGAAT 279809 | |||||| || |||| ||||| |||| || | | | || |||||| | Sbjct 14352223 AGGATATGATCCAAATACATATC-TTGATCAAGATGTTGATAGTATTAGTTATGAAGATT 14352165 Query 279810 TTATTGATAAAGAACTGATCCATTTTTCTAATT--ATGATGTTCATCGTTCTATTCCTCA 279867 || || |||||||| | || ||| |||| || ||||| | | | ||||||||| Sbjct 14352164 TTGTTCATAAAGAATTAAT--ATTATTCTCATATGATGATTGTGAAAGGTCTATTCCTTC 14352107 Query 279868 TTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAA 279927 | | | ||||| || ||||| ||||| | || | ||| | ||||| ||| ||| Sbjct 14352106 TGTTGTAGATGGATTAAAACCATCACAAAGAAAAGTGTTATGGACATGTTTAGAAAAAAA 14352047 Query 279928 ATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTA 279987 | | || ||| | || | || ||| | || |||||| ||| | || || Sbjct 14352046 TATTATGAAAGAATTAAAAGTATCACAATTATCTGGACTTGTTTCTGAAAAGTCATCATA 14351987 Query 279988 TCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGA-TTTTATGG 280046 |||||| || |||| |||||||||| | | ||||| | | || ||| | |||| ||| Sbjct 14351986 TCATCATGGAGAAGTATCTCTTCAAGCTACCATTGTTAATATGGCACAAAACTTTTGTGG 14351927 Query 280047 CTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACA-AT 280105 | |||| || | ||| | | | |||| ||||||||||||||| | ||| | Sbjct 14351926 AT-CAAATAATGTTAATTGGTTATTACCATCTGGTCAATTTGGTTCAAG-ATTAGGAGGA 14351869 Query 280106 GGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATATTACAAACAAG 280165 || |||||||| | || | || || ||||| | | ||| ||||| | | Sbjct 14351868 GGCAAAGATCAAGCAGCAGCAAGATATATTTATACACGATTATCAAGTATTAGTAGATAT 14351809 Query 280166 TTATTTATCAATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGTCTTGCTATT 280225 |||| | || |||| | |||||| | || ||||| | | ||| Sbjct 14351808 TTATGTCCTAAAGATGATGACCAAATATTAGAATATCTTATTGATGAAGATAGAAGAATT 14351749 Query 280226 GAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTCAAGGAATT 280285 ||||||| ||||||| || ||||| |||| | | |||||||| ||| | || ||| Sbjct 14351748 GAACCAAAATATTATTTCCCTATTATTCCTACAGTATTAGTTAATGGAGCTGATGGTATT 14351689 Query 280286 GGAACAGG 280293 |||||||| Sbjct 14351688 GGAACAGG 14351681 Score = 89.7 bits (98), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 8/150 (5%) Strand=Plus/Plus Query 167784 AATAACAAAATTGTTTCTAATGATTTAACACCTCTATCAACATAATCACCTAAAAATATA 167843 ||||| |||| ||||| | || |||| |||||||||||||||||||||||||||||| Sbjct 5284572 AATAATAAAAACGTTTCAACAGAATTAAACCCTCTATCAACATAATCACCTAAAAATATA 5284631 Query 167844 TATTTATTTTGGTT--TGAAGGATTATCTAGTTTTTTAAAAATATTCAATAAATCACTAA 167901 || ||||||| || || ||| || || ||||| | |||||||| | || Sbjct 5284632 TA-----TTTGGTTGATGGTGGTTTACCTGCAACTTCAAAAAGTTGTAATAAATCCCAAA 5284686 Query 167902 ATTGACCATGTAAATCACCTACAACCTTTA 167931 |||| ||||| | ||| || |||| || || Sbjct 5284687 ATTGTCCATGAATATCTCC-ACAAACTGTA 5284715 Score = 89.7 bits (98), Expect = 1e-12 Identities = 173/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 36044 TTCTTGTCAAAAGGAGTTTGTATTCACCATTCCGGTCTTGTACCGGTAATCAAAGAGATC 36103 || || | ||||||||| | || || ||||| || | |||| |||| ||||| | Sbjct 6252738 TTATTATTAAAAGGAGTAGGAATGCATCATTCAGGATTATTACCTATAATGAAAGAAACA 6252679 Query 36104 ATTGAGATTCTTTTTGAGAAAAAGTATATCAAACTGATGATG-GTTACAGAGACATTCGC 36162 |||| || | || | | || | || ||| || | || | ||||| ||||| || Sbjct 6252678 GTTGAAATATTATTCCA-AGAAGGATTAATAAAATGTTTATTTGCAACAGAAACATTTGC 6252620 Query 36163 TGTCGGAATCAACATGCCTACAAGAACAGTAGTGTTTACTGAACTTGAGAAGTTTGATGG 36222 | | ||| | || ||||| ||||||| || || |||||| | | | || | |||||| Sbjct 6252619 TATGGGATTAAATATGCCAGCAAGAACTGTTGTATTTACTAATGTAAAAAAATATGATGG 6252560 Query 36223 AAAGGAAAAAAGAGTACTTTTACCATCTGAGTATACTCAGATCGCTGGTCGTGCTGGAAG 36282 ||| |||| ||| ||| |||| ||||||| ||| || ||| | |||||||| Sbjct 6252559 AAAAGAAACGAGATATCTTAGACCAGGAGAGTATATTCAAATGAGTGGAAGAGCTGGAAG 6252500 Query 36283 ACGAGGAAAAGAT 36295 | ||||||||||| Sbjct 6252499 AAGAGGAAAAGAT 6252487 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/213 (71%), Gaps = 12/213 (6%) Strand=Plus/Plus Query 227222 ATATTGGTGATATAGTGCATCGAAATTTAATTGATGATGATTTTATAATTGTGAATCGTC 227281 ||||||| |||| |||||| || || | || ||| |||| | | ||| | ||| | | Sbjct 10946658 ATATTGGAGATACTGTGCATAGATATATTATGAATGGAGATTATGTTATTTTTAATAGAC 10946717 Query 227282 AGCCATCATTACATAAAAAATCAATATTATG--TCATCGTGTTAGAATCCATAAGGATTT 227339 | || |||||||||| || | | ||| ||| |||| |||||| | | | |||| Sbjct 10946718 AACCTTCATTACATAGAA--TGAGTATGATGGGTCATAAAGTTAGAGTT--TTACCATTT 10946773 Query 227340 AG--CAATTAGATTGAATCCTAATGTGACAGAGGGC--TATAATGCAGATTTTGATGGAG 227395 || ||||| ||||| | |||||| | | |||||||||||||||||||| | Sbjct 10946774 TCTACATTTAGAATGAAT--TTATGTGATACTACACCTTATAATGCAGATTTTGATGGTG 10946831 Query 227396 ATGAAATGAATGTCCATATACCTCAATCAATTG 227428 ||||||||||| | ||| |||| ||| || ||| Sbjct 10946832 ATGAAATGAATTTGCATGTACCACAAACACTTG 10946864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812784793961