Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 109 1e-18 >seq1 Length=19924566 Score = 109 bits (120), Expect = 1e-18 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC- 206243 ||||| || || ||||| || ||||| || ||||| ||| |||| | | || | Sbjct 18441400 AAAACTCTTACTGGAAAGACTATCACATTAGAAGTCGAACCAAATGACTCTATTGATGCT 18441459 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 | |||||| || |||||||||||||||||||||| || || ||||||||||| || Sbjct 18441460 ATTAAAGCTAA-GATTCAAGAAAAAGAAGGAATTCCACCAGATCAACAAAGACTTATTTT 18441518 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||| || || ||||| |||| |||| | | ||||| ||| | || ||||| || Sbjct 18441519 TGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAACATTCAAAAAGAATC 18441578 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 || ||||| | || || ||| Sbjct 18441579 AACACTTCATTTAGTCTTAAGA 18441600 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || ||||| |||||||| ||||| || ||||| ||| ||| Sbjct 12568174 CAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAATGAT 12568233 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || | | ||| ||||| |||||||||||||||||| || || ||| Sbjct 12568234 TCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAACAA 12568293 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||| || || ||||| || || ||||| |||| |||| | | ||||| ||| | Sbjct 12568294 AGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAACATT 12568353 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || ||||| || || ||||| | || || ||| Sbjct 12568354 CAAAAAGAATCAACACTTCATTTAGTCTTAAGA 12568386 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || ||||| |||||||| ||||| || ||||| ||| ||| Sbjct 12575060 CAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAATGAT 12575119 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || | | ||| ||||| |||||||||||||||||| || || ||| Sbjct 12575120 TCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAACAA 12575179 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||| || || ||||| || || ||||| |||| |||| | | ||||| ||| | Sbjct 12575180 AGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAACATT 12575239 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || ||||| || || ||||| | || || ||| Sbjct 12575240 CAAAAAGAATCAACACTTCATTTAGTCTTAAGA 12575272 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || ||||| |||||||| ||||| || ||||| ||| ||| Sbjct 16561383 CAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAATGAT 16561324 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || | | ||| ||||| |||||||||||||||||| || || ||| Sbjct 16561323 TCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAACAA 16561264 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||| || || ||||| || || ||||| |||| |||| | | ||||| ||| | Sbjct 16561263 AGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAACATT 16561204 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || ||||| || || ||||| | || || ||| Sbjct 16561203 CAAAAAGAATCAACACTTCATTTAGTCTTAAGA 16561171 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || ||||| |||||||| ||||| || ||||| ||| ||| Sbjct 3528541 CAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAATGAT 3528482 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || | | ||| ||||| |||||||||||||||||| || || ||| Sbjct 3528481 TCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAACAA 3528422 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||| || || ||||| || || ||||| |||| ||| | | ||||| ||| | Sbjct 3528421 AGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAAACTCTTTCAGATTATAACATT 3528362 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || ||||| || || ||||| | || || ||| Sbjct 3528361 CAAAAAGAATCAACACTTCATTTAGTCTTAAGA 3528329 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 206246 TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCG 206305 |||||| || |||||||||||||||||||||| || || ||||||||||| || | Sbjct 4820896 TAAAGCTAA-GATTCAAGAAAAAGAAGGAATTCCACCTGATCAACAAAGACTTATTTTTG 4820838 Query 206306 CCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTA 206365 | || || || || ||||| |||| ||| | | ||||| ||| | || ||||| || | Sbjct 4820837 CAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATTATAACATTCAAAAAGAATCAA 4820778 Query 206366 CTCTTCACCTTGTTTTGAGA 206385 | ||||| | || || ||| Sbjct 4820777 CACTTCATTTAGTCTTAAGA 4820758 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 206246 TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCG 206305 |||||| || |||||||||||||||||||||| || || ||||||||||| || | Sbjct 17036627 TAAAGCTAA-GATTCAAGAAAAAGAAGGAATTCCACCTGATCAACAAAGACTTATTTTTG 17036685 Query 206306 CCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTA 206365 | || || || || ||||| |||| ||| | | ||||| ||| | || ||||| || | Sbjct 17036686 CAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATTATAACATTCAAAAAGAATCAA 17036745 Query 206366 CTCTTCACCTTGTTTTGAGA 206385 | ||||| | || || ||| Sbjct 17036746 CACTTCATTTAGTCTTAAGA 17036765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820784857921