Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 >seq1 Length=19924566 Score = 134 bits (148), Expect = 1e-26 Identities = 174/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | ||||| || ||| | || ||||| | || || | ||||| ||| | Sbjct 4820976 AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCA 4820917 Query 25232 AACGATACTATCGA-GCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || ||| |||| || || | |||| | || | | | || ||||| || || || || || Sbjct 4820916 AATGATTCTATTGATGCTATTAAAGCTAAGATTCAA-GAAAAAGAAGGAATTCCACCTGA 4820858 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG-ATAGAAA-TGTCAGCGAT 25348 ||| |||||||| |||| | ||||||||| | ||||| | | ||| | | |||| || Sbjct 4820857 TCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAG--AT 4820800 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 || || |||||||||||||| || |||||||||| |||||||| ||||||||| Sbjct 4820799 TATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 4820746 Score = 134 bits (148), Expect = 1e-26 Identities = 174/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | ||||| || ||| | || ||||| | || || | ||||| ||| | Sbjct 17036547 AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCA 17036606 Query 25232 AACGATACTATCGA-GCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || ||| |||| || || | |||| | || | | | || ||||| || || || || || Sbjct 17036607 AATGATTCTATTGATGCTATTAAAGCTAAGATTCAA-GAAAAAGAAGGAATTCCACCTGA 17036665 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG-ATAGAAA-TGTCAGCGAT 25348 ||| |||||||| |||| | ||||||||| | ||||| | | ||| | | |||| || Sbjct 17036666 TCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAG--AT 17036723 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 || || |||||||||||||| || |||||||||| |||||||| ||||||||| Sbjct 17036724 TATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 17036777 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||| | || |||||| | ||||| | ||||||||| | || Sbjct 3528544 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 3528485 Query 25235 GATACTATCGA-GCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| |||| || || | ||| | || | | || ||||| || || || || ||||| Sbjct 3528484 GATTCTATTGATGCTATTAAGGCTAAGATCCAA-GAAAAAGAAGGAATTCCACCAGATCA 3528426 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||||| |||| | || |||||| | ||||| | | || | | ||||| || Sbjct 3528425 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAAACTCTTTCAGATTATAA 3528366 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 |||||||||||||| || |||||||||| |||||||| ||||||||| Sbjct 3528365 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 3528317 Score = 131 bits (144), Expect = 1e-25 Identities = 177/239 (74%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 25167 TAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCG 25226 ||| ||| |||||| | ||||| ||||| | || ||||| | ||||| | ||||||| Sbjct 18441378 TAATCAA-ATGCAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACATTAGAAGTCG 18441436 Query 25227 AAGCCAACGATACTATCGA-GCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCG 25285 || | || || |||| || || | |||| | || | | | || ||||| || || || Sbjct 18441437 AACCAAATGACTCTATTGATGCTATTAAAGCTAAGATTCAA-GAAAAAGAAGGAATTCCA 18441495 Query 25286 CCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG-ATAGAAA-TGTCA 25343 || ||||| |||||||| |||| | || |||||| | ||||| | | ||| | ||| Sbjct 18441496 CCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCA 18441555 Query 25344 GCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 | |||| || |||||||||||||| || |||||||||| |||||||| ||||||||| Sbjct 18441556 G--ATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 18441612 Score = 129 bits (142), Expect = 5e-25 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||| | || |||||| | ||||| | ||||||||| | || Sbjct 12568171 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12568230 Query 25235 GATACTATCGA-GCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| |||| || || | ||| | || | | || ||||| || || || || ||||| Sbjct 12568231 GATTCTATTGATGCTATTAAGGCTAAGATCCAA-GAAAAAGAAGGAATTCCACCAGATCA 12568289 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG-ATAGAAA-TGTCAGCGATTAC 25351 |||||||| |||| | || |||||| | ||||| | | ||| | |||| |||| Sbjct 12568290 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAG--ATTAT 12568347 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 || |||||||||||||| || |||||||||| |||||||| ||||||||| Sbjct 12568348 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 12568398 Score = 129 bits (142), Expect = 5e-25 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||| | || |||||| | ||||| | ||||||||| | || Sbjct 12575057 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12575116 Query 25235 GATACTATCGA-GCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| |||| || || | ||| | || | | || ||||| || || || || ||||| Sbjct 12575117 GATTCTATTGATGCTATTAAGGCTAAGATCCAA-GAAAAAGAAGGAATTCCACCAGATCA 12575175 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG-ATAGAAA-TGTCAGCGATTAC 25351 |||||||| |||| | || |||||| | ||||| | | ||| | |||| |||| Sbjct 12575176 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAG--ATTAT 12575233 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 || |||||||||||||| || |||||||||| |||||||| ||||||||| Sbjct 12575234 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 12575284 Score = 129 bits (142), Expect = 5e-25 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||| | || |||||| | ||||| | ||||||||| | || Sbjct 16561386 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 16561327 Query 25235 GATACTATCGA-GCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| |||| || || | ||| | || | | || ||||| || || || || ||||| Sbjct 16561326 GATTCTATTGATGCTATTAAGGCTAAGATCCAA-GAAAAAGAAGGAATTCCACCAGATCA 16561268 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG-ATAGAAA-TGTCAGCGATTAC 25351 |||||||| |||| | || |||||| | ||||| | | ||| | |||| |||| Sbjct 16561267 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAG--ATTAT 16561210 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 || |||||||||||||| || |||||||||| |||||||| ||||||||| Sbjct 16561209 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 16561159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094394436320