Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq1 152 4e-32 >seq1 Length=19924566 Score = 152 bits (168), Expect = 4e-32 Identities = 176/235 (75%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 ||||||||||| |||||||| ||| | ||||| ||||| ||||| | ||| ||||| Sbjct 4820976 AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCA 4820917 Query 106317 GGCGATTCTGTTG--GCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTG 106374 |||||| ||| || | | ||| || ||| || |||||||| | || || Sbjct 4820916 AATGATTCTATTGATGCTA--TTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCTG 4820859 Query 106375 ATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATT 106434 |||||||||| ||||||| ||| ||||||||||||||||| || || | |||| Sbjct 4820858 ATCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATT 4820799 Query 106435 ACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATA 106489 | ||||| ||||||||||| ||||| |||||||| || || ||| |||||||||| Sbjct 4820798 ATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATA 4820744 Score = 152 bits (168), Expect = 4e-32 Identities = 176/235 (75%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 ||||||||||| |||||||| ||| | ||||| ||||| ||||| | ||| ||||| Sbjct 17036547 AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCA 17036606 Query 106317 GGCGATTCTGTTG--GCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTG 106374 |||||| ||| || | | ||| || ||| || |||||||| | || || Sbjct 17036607 AATGATTCTATTGATGCTA--TTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCTG 17036664 Query 106375 ATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATT 106434 |||||||||| ||||||| ||| ||||||||||||||||| || || | |||| Sbjct 17036665 ATCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATT 17036724 Query 106435 ACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATA 106489 | ||||| ||||||||||| ||||| |||||||| || || ||| |||||||||| Sbjct 17036725 ATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATA 17036779 Score = 138 bits (152), Expect = 9e-28 Identities = 172/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 106258 AAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCG 106317 |||||||||| ||||||||||| | ||||| ||||| || || | ||| ||||| Sbjct 18441383 AAATGCAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACATTAGAAGTCGAACCAA 18441442 Query 106318 GCGATTCTGTTG--GCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 || ||| ||| || | | ||| || ||| || |||||||| | || || Sbjct 18441443 ATGACTCTATTGATGCTA--TTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCAGA 18441500 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 ||||||||| ||||||| ||| || |||||||||||||| || ||| | ||||| Sbjct 18441501 TCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTA 18441560 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATA 106489 ||||| ||||||||||| ||||| |||||||| || || ||| |||||||||| Sbjct 18441561 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATA 18441614 Score = 129 bits (142), Expect = 5e-25 Identities = 169/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| |||||||| ||| | ||||| || || || || | ||| ||||| Sbjct 3528544 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 3528485 Query 106320 GATTCTGTTG--GCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377 |||||| ||| || | | || || || || |||||||| | || |||| Sbjct 3528484 GATTCTATTGATGCTA--TTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATC 3528427 Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437 ||||||| ||||||| ||| || |||||||||||||| |||||| | ||||| | Sbjct 3528426 AACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAAACTCTTTCAGATTATA 3528367 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATA 106489 |||| ||||||||||| ||||| |||||||| || || ||| |||||||||| Sbjct 3528366 ACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATA 3528315 Score = 125 bits (138), Expect = 6e-24 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| |||||||| ||| | ||||| || || || || | ||| ||||| Sbjct 12568171 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12568230 Query 106320 GATTCTGTTG--GCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377 |||||| ||| || | | || || || || |||||||| | || |||| Sbjct 12568231 GATTCTATTGATGCTA--TTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATC 12568288 Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437 ||||||| ||||||| ||| || |||||||||||||| || ||| | ||||| | Sbjct 12568289 AACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATA 12568348 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATA 106489 |||| ||||||||||| ||||| |||||||| || || ||| |||||||||| Sbjct 12568349 ACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATA 12568400 Score = 125 bits (138), Expect = 6e-24 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| |||||||| ||| | ||||| || || || || | ||| ||||| Sbjct 12575057 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12575116 Query 106320 GATTCTGTTG--GCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377 |||||| ||| || | | || || || || |||||||| | || |||| Sbjct 12575117 GATTCTATTGATGCTA--TTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATC 12575174 Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437 ||||||| ||||||| ||| || |||||||||||||| || ||| | ||||| | Sbjct 12575175 AACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATA 12575234 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATA 106489 |||| ||||||||||| ||||| |||||||| || || ||| |||||||||| Sbjct 12575235 ACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATA 12575286 Score = 125 bits (138), Expect = 6e-24 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| |||||||| ||| | ||||| || || || || | ||| ||||| Sbjct 16561386 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 16561327 Query 106320 GATTCTGTTG--GCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377 |||||| ||| || | | || || || || |||||||| | || |||| Sbjct 16561326 GATTCTATTGATGCTA--TTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATC 16561269 Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437 ||||||| ||||||| ||| || |||||||||||||| || ||| | ||||| | Sbjct 16561268 AACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATA 16561209 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATA 106489 |||| ||||||||||| ||||| |||||||| || || ||| |||||||||| Sbjct 16561208 ACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATA 16561157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402329595096608