Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 116 5e-21 >seq1 Length=19924566 Score = 116 bits (128), Expect = 5e-21 Identities = 261/384 (68%), Gaps = 16/384 (4%) Strand=Plus/Minus Query 87106 ATTCAATTGATAATCGGTCCTATGTTTTCCGGTAAAAGTACAGAACTTATTAGAAGAGTT 87165 |||||||| || || |||||||||||| ||||||| ||| ||| | || ||| || Sbjct 4694836 ATTCAATTAATTATTGGTCCTATGTTTAGTGGTAAAACTACTGAATTAATAAGACTTATT 4694777 Query 87166 AGACGGTATCAGATAGCACAATATAAATGCA-TAACCATAAAATATACTAATGATACTAG 87224 | | ||| | ||||| ||| | || | | | || ||||| |||| |||||||| Sbjct 4694776 AAAAGGTTT-AGATATTCCAAAAAAACTACTGTTGTTATTAAATACTCTAAGGATACTAG 4694718 Query 87225 ATATGGAACAGGATTATGGA-------CTCATGATAAACATAATTTCTCTGCTATGGAAA 87277 |||||| | ||| ||| | ||||||||||| | | ||||| || Sbjct 4694717 GTATGGATC-GGAAGATGAAGCTATTTCTCATGATAAAGAATCATGGAAAGCTATTCCAA 4694659 Query 87278 CGACTAAATTACTGAATATAATTGATGCAGTTACTGATTTCTCCGTGATAGGTATAGACG 87337 | | |||||| || || |||| | | | | ||| || || ||||| || | Sbjct 4694658 CCATGAAATTAATGCCAGTACTTGAAACCGCTCTTAATTATGAAGTTATTGGTATTGATG 4694599 Query 87338 AGGGTCAGTTCTTCCCAGACATAGTGGAATTCTGCGAATACATG-GCAAACAATGGAAAA 87396 | |||||||||||||||||| || | || || | || |||| |||| |||||| | Sbjct 4694598 AAGGTCAGTTCTTCCCAGACTTAATAGAGTTTTCAGAGG-CATGTGCAAGTTATGGAAGA 4694540 Query 87397 ATAGTTATAGTGGCTGCATTAGATGGAACATTTCAACGAAAACCATTT--ACAACTATTT 87454 | || || | || ||||||||||| ||||| ||| ||||||||||| |||| ||| Sbjct 4694539 TTGGTAATCATAGCAGCATTAGATGGTACATTCCAAAGAAAACCATTTGGACAA--ATTA 4694482 Query 87455 CGAATCTTATTCCGTTATCCGAAA 87478 | |||||||||| |||| |||| Sbjct 4694481 CTGATCTTATTCCATTATGTGAAA 4694458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908791413640