Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 194 1e-44 >seq1 Length=19924566 Score = 194 bits (214), Expect = 1e-44 Identities = 410/600 (68%), Gaps = 20/600 (3%) Strand=Plus/Plus Query 19244 TTGGAGGA-TTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 |||| ||| |||| ||||| ||| | || || | | ||||||||| |||| ||| | Sbjct 5272037 TTGGTGGACTTGAC-AAAGAATTTACAGATATTCTAAGAAGAGCATTTATGTCTCGTATG 5272095 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 ||| | |||| |||||| |||| || |||||||||| ||| ||||| | ||| Sbjct 5272096 TTTCCATCAGAAACTATTAAAAAATTAGGTATTAAACATGTTAAAGGAATTTTGTTATAT 5272155 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAA 19422 || ||||| || ||||||||||| ||||| || ||| || | ||||| | || || Sbjct 5272156 GGACCACCAGGATGTGGAAAAACTTTAATGGCAAGACAAATAGGTAAAATGGTTTCATCT 5272215 Query 19423 C---AACCTCCCAAAATTGTAAATGGTCC-TGAAATCTTAAATAAATATGTAGGTCAATC 19478 ||||| ||| | || | ||||| | | |||||| ||||||||| || | || Sbjct 5272216 GTTGAACCT---AAATTAGTTGAAGGTCCATCCATTCTTAA-TAAATATGTCGGAGAGTC 5272271 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG 19538 |||| ||| | || || ||||| || ||||| | ||||| || | ||| Sbjct 5272272 AGAAGCTAATATCAGAAACTTATTTGCAGAGGCTGAGGCTGAACAGAATCAAAGAGGAGA 5272331 Query 19539 CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG 19598 | ||| | |||||||| || || |||||||| || || || ||||| |||||||| Sbjct 5272332 TGATAGTCAACTCCACATTATTATTCTTGATGAATTAGATGCTATTTGTAAACAAAGAGG 5272391 Query 19599 T--TC----TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCT--GTCAAAA 19650 || || | | ||||||| ||| ||| ||||||| ||| | | || || | Sbjct 5272392 AAGTCGTAATGATTCTACTGGAGTATCTGATACTATTGTCAACCAATTATTAAGT-AAGA 5272450 Query 19651 TTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAA 19710 || || || ||||| | | ||||||||| | |||||||| |||||||||||| |||| Sbjct 5272451 TT-GATGGAGTTAATGCATTAAATAATATTCTTGTTATTGGAATGACTAATAGAATGGAT 5272509 Query 19711 TTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTA 19770 | ||||| || |||||| |||| || | | ||| | | || |||||| || Sbjct 5272510 ATGTTAGACGATGCTTTATTAAGACCAGGAAGACTTGAAGTTCAAATTGAAATTGGACTA 5272569 Query 19771 CCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAAT 19830 || |||||| ||| | || |||||||||| || || ||| || ||| || ||||| Sbjct 5272570 CCAGATGAACATGGTAGAGTTCAAATTTTAAATATTCACACAAAAAAAATGAGAGAAAAT 5272629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455995156005