Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 2e-13 >seq1 Length=19924566 Score = 91.5 bits (100), Expect = 2e-13 Identities = 272/412 (66%), Gaps = 21/412 (5%) Strand=Plus/Plus Query 27648 TTGATTATGTTTTTCACTTTGCCGCACAAAGTCATGTAGACAATTCATTTACAAGTCCTC 27707 ||||| |||| |||| ||||| || |||| |||||||| ||||||||| || | | Sbjct 2869220 TTGATACTGTTCTTCATTTTGCAGCTCAAACCCATGTAGATAATTCATTTGGAAATTCAT 2869279 Query 27708 TTGGGTTTACTTTAGACAATACATATGGTACACATACACTCATTGAAGTCTGTAGGCGTC 27767 | |||||| |||||| |||||||||||| | | ||| | || | Sbjct 2869280 TCCAATTTACTCATAACAATATTTATGGTACACATGTTTTATTAGAAATTGCTAAAGCTA 2869339 Query 27768 A-CATACCAAATGTTGAATTTATACATTTTAGTACAGATGAAGTATACGGTGAATCAAAA 27826 | |||| ||| | |||||| ||| | ||| || ||||| || ||| || | Sbjct 2869340 ATCATATTAAAAG----ATTTATTCATGTCTCTACTGACGAAGTTTATGGTCAAGTTATT 2869395 Query 27827 ACAGGTGAACCTTTCACCGAAGACACTGGGGTACTTAGACCAACAAATCCATATTCAGCA 27886 | || || || ||| || || || | | ||||| ||||||||||||||| Sbjct 2869396 GGAAATG---CTGCAACTGAAAACTCTT---TATTAAACCCAACTAATCCATATTCAGCA 2869449 Query 27887 TCAAAAGCGGCGGCCGAAATGATAGTCCGTTCATATATAGAATCATTTGATATGAATATC 27946 ||||||| | || ||| | || | ||| ||| | ||||||||| || | | Sbjct 2869450 ACAAAAGCTGGTGCTGAATTTATTGCTCGTGCATTTTATCAATCATTTG----GACTTCC 2869505 Query 27947 A-AAATAATT---CGCTGTAATAATGTTTATGGTCCAAATCAATACCCGGAGAAACTCAT 28002 | ||| ||| | | |||||||| | ||| ||| | |||| || |||||| | || Sbjct 2869506 ACTAATCATTACAAGAGGAAATAATGTATTTGGACCACACCAATTTCCAGAGAAATTAAT 2869565 Query 28003 TCCAAAGTTTATAAGACTT-TTGAAAGAGGATAAAAAGTGTACAATTCATGG 28053 ||| ||||| || | ||| |||| |||||| ||||| ||| || ||||||| Sbjct 2869566 TCCTAAGTTCATTACTCTTCTTGACAGAGGA-AAAAATTGTCCACTTCATGG 2869616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031992149600