Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq1 150 8e-32 >seq1 Length=19924566 Score = 150 bits (166), Expect = 8e-32 Identities = 417/631 (66%), Gaps = 14/631 (2%) Strand=Plus/Plus Query 64862 GGATTATAACACATAATGTCAGTACTAAATCCTGTGCCAATACCCTTTGAGCCATTTATT 64921 ||||||||| || | ||||||| ||||||| |||||||| | | ||||| | | Sbjct 14351651 GGATTATAATTTGAAACGGCAGTACTCCATCCTGTTCCAATACCATCAGCTCCATTAACT 14351710 Query 64922 AAAATCATCGGAATAATTGGTGCATAAAAGATAGGCTCAACAATGAGACCATCATCATCC 64981 || | | |||||||| || |||| | | || |||| | | | |||||| Sbjct 14351711 AATACTGTAGGAATAATAGGGAAATAATATTTTGGTTCAATTCTTCTATCTTCATCAATA 14351770 Query 64982 AAATACTTCAAAATGGCATCATCCTCTTTTGGAAATATAGAACGAGTTAT--TTTATTCA 65039 | ||| | || || ||||| ||||| ||| ||| | | | | | || || || | Sbjct 14351771 AGATATTCTAATATTTGGTCATCATCTTTAGGACATAAATATCTACTAATACTTGAT--A 14351828 Query 65040 ATTGAGTATAAATATATCTTTCGGATGCGTGGTCTT---GTCCAGTTCGTCGTGTTCCAA 65096 || | ||||||||||||||| | | ||| || |||| ||| | || || |||| Sbjct 14351829 ATCGTGTATAAATATATCTTGCTGCTGCTTGATCTTTGCCTCCTCCTAATCTTGAACCAA 14351888 Query 65097 ACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTC 65156 | |||||| ||| | ||| |||||| ||| ||||| ||| ||| || || ||||| Sbjct 14351889 ATTGACCAGATGGTAATAACCAATTAACATTATTTGATCCACAAAAGTTTTGTGCCATAT 14351948 Query 65157 CGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACAT 65216 | ||| | || | | | |||| || ||||||||| ||| | |||||| ||| Sbjct 14351949 TAACAATGGTAGCTTGAAGAGATACTTCTCCATGATGATATGATGACTTTTCAGAAACAA 14352008 Query 65217 ATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTT-TAA--ATGCAGAAT 65273 |||| ||||| | ||||||| ||| | | | ||| |||| ||| ||| | Sbjct 14352009 GTCCAGATAATTGTGATACTTTTAATTCTTTCATAATATTTTTTTCTAAACATGTCCATA 14352068 Query 65274 ACAATATTTTCCGTAAACTAATTTTCAATCCATCCATTAAATTAGGAATGCTTCTGTCAC 65333 ||| | || | || | | |||| |||||||| | | | |||||| || |||| Sbjct 14352069 ACACTTTTCTTTGTGA--TGGTTTT-AATCCATCTACAACAGAAGGAATAGACCTTTCAC 14352125 Query 65334 AATCATATTTTGAGAAATGTATGAATTCTTTGTTAATAAATTCTTCATATGAAACACTCG 65393 |||||| | |||||| ||| |||||||| | || ||| |||||||| || ||| Sbjct 14352126 AATCATCATATGAGAATAATATTAATTCTTTATGAACAAAATCTTCATAACTAATACTAT 14352185 Query 65394 TATTATCTGTATTCAAATAACTATCGCGATTATATTTTTCTAACCATTCTTTTCTATCAC 65453 | |||| || | ||| ||| ||| |||| || |||||| ||||| | |||| Sbjct 14352186 CAACATCTTGATCAAGATATGTATTTGGATCATATCCTTTTAACCACTCTTTACGATCAT 14352245 Query 65454 TTGAGCGTTTT-TATTAAATATTAAATCAAT 65483 || | |||| |||||||| |||||| || Sbjct 14352246 CTGCTCTTTTTCTATTAAATGCTAAATCTAT 14352276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235679997127650