Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 >seq1 Length=19924566 Score = 123 bits (136), Expect = 3e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| ||||| || ||||||||||| | || ||||| || Sbjct 4820974 AATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCAAA 4820915 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| | | || ||||| ||||| || || || |||||||| || || || Sbjct 4820914 TGATTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCTGATCA 4820855 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | || |||||||| || || ||| | || || | || || |||| ||||| Sbjct 4820854 ACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATTATAA 4820795 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | ||||| ||||| || |||||| ||||||| Sbjct 4820794 CATTCAAAAAGAATCAACACTTCATTTAGTCTT 4820762 Score = 123 bits (136), Expect = 3e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| ||||| || ||||||||||| | || ||||| || Sbjct 17036549 AATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCAAA 17036608 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| | | || ||||| ||||| || || || |||||||| || || || Sbjct 17036609 TGATTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCTGATCA 17036668 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | || |||||||| || || ||| | || || | || || |||| ||||| Sbjct 17036669 ACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATTATAA 17036728 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | ||||| ||||| || |||||| ||||||| Sbjct 17036729 CATTCAAAAAGAATCAACACTTCATTTAGTCTT 17036761 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || ||||| || |||||||| || | || || || || Sbjct 18441384 AATGCAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACATTAGAAGTCGAACCAAA 18441443 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| |||| | | || ||||| ||||| || || || |||||||| ||||| || Sbjct 18441444 TGACTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCAGATCA 18441503 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | || |||||||| || || ||| | || || | || || |||| ||||| Sbjct 18441504 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAA 18441563 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | ||||| ||||| || |||||| ||||||| Sbjct 18441564 CATTCAAAAAGAATCAACACTTCATTTAGTCTT 18441596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310392871120