Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31]
1 sequences; 19,924,566 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq1 116 3e-21
>seq1
Length=19924566
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| |||||||| || || ||| |||| || | ||||| |||||
Sbjct 18441385 ATGCAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACATTAGAAGTCGAACCAAAT 18441444
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||||| ||||| | ||| || |||||||| |||||||| || ||||| ||||||
Sbjct 18441445 GACTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCAGATCAA 18441504
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | | || | || || |||||||| ||||| | ||| |||| ||||| |||
Sbjct 18441505 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAAC 18441564
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199
|||||||| || || || | ||||| || ||
Sbjct 18441565 ATTCAAAAAGAATCAACACTTCATTTAGTCTT 18441596
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || || || || || ||| ||||||| | ||||| |||||
Sbjct 4820973 ATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCAAAT 4820914
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| || ||||| | ||| || |||||||| |||||||| || ||||| ||||||
Sbjct 4820913 GATTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCTGATCAA 4820854
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | | || | || ||||||||||| ||||| | ||| |||| ||||| |||
Sbjct 4820853 CAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATTATAAC 4820794
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199
|||||||| || || || | ||||| || ||
Sbjct 4820793 ATTCAAAAAGAATCAACACTTCATTTAGTCTT 4820762
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || || || || || ||| ||||||| | ||||| |||||
Sbjct 17036550 ATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCAAAT 17036609
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| || ||||| | ||| || |||||||| |||||||| || ||||| ||||||
Sbjct 17036610 GATTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCTGATCAA 17036669
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | | || | || ||||||||||| ||||| | ||| |||| ||||| |||
Sbjct 17036670 CAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATTATAAC 17036729
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199
|||||||| || || || | ||||| || ||
Sbjct 17036730 ATTCAAAAAGAATCAACACTTCATTTAGTCTT 17036761
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| |||||||| || || || || || || |||| || | ||||| |||||
Sbjct 12568171 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12568230
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| || ||||| | || || || ||||| |||||||| || ||||| ||||||
Sbjct 12568231 GATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAA 12568290
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | | || | || || |||||||| ||||| | ||| |||| ||||| |||
Sbjct 12568291 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAAC 12568350
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199
|||||||| || || || | ||||| || ||
Sbjct 12568351 ATTCAAAAAGAATCAACACTTCATTTAGTCTT 12568382
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| |||||||| || || || || || || |||| || | ||||| |||||
Sbjct 12575057 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12575116
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| || ||||| | || || || ||||| |||||||| || ||||| ||||||
Sbjct 12575117 GATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAA 12575176
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | | || | || || |||||||| ||||| | ||| |||| ||||| |||
Sbjct 12575177 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAAC 12575236
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199
|||||||| || || || | ||||| || ||
Sbjct 12575237 ATTCAAAAAGAATCAACACTTCATTTAGTCTT 12575268
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| |||||||| || || || || || || |||| || | ||||| |||||
Sbjct 16561386 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 16561327
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| || ||||| | || || || ||||| |||||||| || ||||| ||||||
Sbjct 16561326 GATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAA 16561267
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | | || | || || |||||||| ||||| | ||| |||| ||||| |||
Sbjct 16561266 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAAC 16561207
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199
|||||||| || || || | ||||| || ||
Sbjct 16561206 ATTCAAAAAGAATCAACACTTCATTTAGTCTT 16561175
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| |||||||| || || || || || || |||| || | ||||| |||||
Sbjct 3528544 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 3528485
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| || ||||| | || || || ||||| |||||||| || ||||| ||||||
Sbjct 3528484 GATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAA 3528425
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | | || | || || |||||||| ||||| | || |||| ||||| |||
Sbjct 3528424 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAAACTCTTTCAGATTATAAC 3528365
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199
|||||||| || || || | ||||| || ||
Sbjct 3528364 ATTCAAAAAGAATCAACACTTCATTTAGTCTT 3528333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434918394563520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |