Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 129 1e-24 >seq1 Length=19924566 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||||| || || |||||||| ||||||||||| | ||| ||| |||| Sbjct 4820758 TCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGTGTCTTTCC 4820817 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | || |||||||| || ||||| | |||||| ||||| |||| |||||| || Sbjct 4820818 TTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGGAATTCCTTCTTT 4820877 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || ||||| ||| | || || | ||| |||||| || | || || Sbjct 4820878 TTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTCAACTTCTAATGTAAT 4820937 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| || || ||||| ||||| | |||||||| Sbjct 4820938 AGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 4820976 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||||| || || |||||||| ||||||||||| | ||| ||| |||| Sbjct 17036765 TCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGTGTCTTTCC 17036706 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | || |||||||| || ||||| | |||||| ||||| |||| |||||| || Sbjct 17036705 TTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGGAATTCCTTCTTT 17036646 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || ||||| ||| | || || | ||| |||||| || | || || Sbjct 17036645 TTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTCAACTTCTAATGTAAT 17036586 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| || || ||||| ||||| | |||||||| Sbjct 17036585 AGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 17036547 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||||| || || |||||||| ||||||||||| | ||| ||| |||| Sbjct 18441600 TCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCC 18441541 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | || || ||||| || ||||| | |||||| || || |||| |||||| || Sbjct 18441540 TTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTT 18441481 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || ||||| ||| | || || | |||| ||| || || | ||||| Sbjct 18441480 TTCTTGAATCTTAGCTTTAATAGCATCAATAGAGTCATTTGGTTCGACTTCTAATGTGAT 18441421 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTAT 211119 |||||||| || ||||| || ||||| | ||||||| || Sbjct 18441420 AGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCATTTGAT 18441380 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||||| || || |||||||| ||||||||||| | ||| ||| |||| Sbjct 12568386 TCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCC 12568327 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | || || ||||| || ||||| | |||||| || || |||| |||||| || Sbjct 12568326 TTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTT 12568267 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || |||||||| || | || || | ||| ||| || || | ||||| Sbjct 12568266 TTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTGAT 12568207 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| ||||| | ||||| Sbjct 12568206 AGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12568171 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||||| || || |||||||| ||||||||||| | ||| ||| |||| Sbjct 12575272 TCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCC 12575213 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | || || ||||| || ||||| | |||||| || || |||| |||||| || Sbjct 12575212 TTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTT 12575153 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || |||||||| || | || || | ||| ||| || || | ||||| Sbjct 12575152 TTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTGAT 12575093 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| ||||| | ||||| Sbjct 12575092 AGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12575057 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||||| || || |||||||| ||||||||||| | ||| ||| |||| Sbjct 16561171 TCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCC 16561230 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | || || ||||| || ||||| | |||||| || || |||| |||||| || Sbjct 16561231 TTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTT 16561290 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || |||||||| || | || || | ||| ||| || || | ||||| Sbjct 16561291 TTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTGAT 16561350 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| ||||| | ||||| Sbjct 16561351 AGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 16561386 Score = 111 bits (122), Expect = 4e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||||| || || |||||||| ||||||||||| | ||| || |||| Sbjct 3528329 TCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTTTTTCC 3528388 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | || || ||||| || ||||| | |||||| || || |||| |||||| || Sbjct 3528389 TTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTT 3528448 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || |||||||| || | || || | ||| ||| || || | ||||| Sbjct 3528449 TTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTGAT 3528508 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| ||||| | ||||| Sbjct 3528509 AGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 3528544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151985148365