Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 125 5e-24 >seq1 Length=19924566 Score = 125 bits (138), Expect = 5e-24 Identities = 179/247 (72%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 23597 ATTAA-TTACTTA--AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTC 23653 ||||| ||||| | ||||||| || || |||||||| || || ||||| || ||||| Sbjct 18441368 ATTAAGTTACTAATCAAATGCAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACAT 18441427 Query 23654 TCGAAGTTGACTCCACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAA 23712 | ||||| || | | ||| || |||| ||||||| | || | || || |||||| Sbjct 18441428 TAGAAGTCGAACCAAATGACTCTATTGATGCTATTAAAGCTAAGA-TTCAAGAAAAAGAA 18441486 Query 23713 GGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGC 23772 || | || ||||||||||| | | || ||||| || |||||| | ||||| | | Sbjct 18441487 GGAATTCCACCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAG 18441546 Query 23773 ACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGA 23832 ||| | ||||| ||||| |||||||| || ||| | |||||||| ||||| || || Sbjct 18441547 ACTCTTTCAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGA 18441606 Query 23833 GGAGGAT 23839 ||||||| Sbjct 18441607 GGAGGAT 18441613 Score = 114 bits (126), Expect = 9e-21 Identities = 210/299 (70%), Gaps = 14/299 (5%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| || ||||| |||||||| ||||| | ||||| || | | Sbjct 3528544 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 3528485 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| |||||| | || | | || |||||||| | || |||||||| Sbjct 3528484 GATTCTATTGATGCTATTAAGGCTAAGA-TCCAAGAAAAAGAAGGAATTCCACCAGATCA 3528426 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || |||||| | ||||| | | ||| | ||||| || Sbjct 3528425 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAAACTCTTTCAGATTATAA 3528366 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAGTTAA 23849 ||| |||||||| || ||| | |||||||| ||||| || ||||||||| |||| Sbjct 3528365 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGAT-----ATTAA 3528311 Query 23850 AGATGAATTG---TATTAATGTAAATGATCTTGTATTTGTAAAAATTATAAAGTATAAC 23905 | || ||||| |||| || ||||| ||||| | ||||| || || || | || ||| Sbjct 3528310 A-AT-AATTGAACTATTCAT-TAAATTATCTTAT-TTTGTTAATTTTTTATAATACAAC 3528256 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| || ||||| |||||||| ||||| | ||||| || | | Sbjct 12568171 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12568230 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| |||||| | || | | || |||||||| | || |||||||| Sbjct 12568231 GATTCTATTGATGCTATTAAGGCTAAGA-TCCAAGAAAAAGAAGGAATTCCACCAGATCA 12568289 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || |||||| | ||||| | | ||| | ||||| || Sbjct 12568290 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAA 12568349 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGAT 23839 ||| |||||||| || ||| | |||||||| ||||| || ||||||||| Sbjct 12568350 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGAT 12568399 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| || ||||| |||||||| ||||| | ||||| || | | Sbjct 12575057 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12575116 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| |||||| | || | | || |||||||| | || |||||||| Sbjct 12575117 GATTCTATTGATGCTATTAAGGCTAAGA-TCCAAGAAAAAGAAGGAATTCCACCAGATCA 12575175 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || |||||| | ||||| | | ||| | ||||| || Sbjct 12575176 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAA 12575235 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGAT 23839 ||| |||||||| || ||| | |||||||| ||||| || ||||||||| Sbjct 12575236 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGAT 12575285 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| || ||||| |||||||| ||||| | ||||| || | | Sbjct 16561386 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 16561327 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| |||||| | || | | || |||||||| | || |||||||| Sbjct 16561326 GATTCTATTGATGCTATTAAGGCTAAGA-TCCAAGAAAAAGAAGGAATTCCACCAGATCA 16561268 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || |||||| | ||||| | | ||| | ||||| || Sbjct 16561267 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAA 16561208 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGAT 23839 ||| |||||||| || ||| | |||||||| ||||| || ||||||||| Sbjct 16561207 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGAT 16561158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009595880508