Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_030117.1 Length=125171 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 2e-11 >seq1 Length=19924566 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 94447 TTAACAGTTAAAGTTGTATTAAGTAACAACACCCCCTGTTTTGCCCAGTCTTCTAAATAT 94506 || || ||||| || | ||||| | || || || ||||||||||| || |||||| Sbjct 2055001 TTTACTGTTAATGTCGCGTTAAGCATTAATACTCCTTGTTTTGCCCATTCCATTAAATAC 2055060 Query 94507 CCATGGTTTGGAATTATAAATGAAGGATAATTTTTC--TTGAGCGCTaaaaaaaTATTTC 94564 ||||| |||||||| |||| || ||| ||| || | || | |||| | || Sbjct 2055061 CCATGTTTTGGAATCTGAAATTCTGGT--ATTGTTCGTTTTAATTCTTTATAAAT-TGTC 2055117 Query 94565 TTAAACTA-GGAGGGATAGGCACCCCTTTACGAACACTAAATGCAAGTCCATGAGCTTGT 94623 || || | ||||| |||| | |||||| |||||||| | |||||||||||| Sbjct 2055118 TTTAATGATGGAGGTATAGCAATTCCTTTATTTACACTAAAACATAATCCATGAGCTTGA 2055177 Query 94624 CCAGGTCCATGATATGGATCTTGTCCAATAATAACAACTTT 94664 || | | ||| || |||||||||||||| |||||||| Sbjct 2055178 CCTTTTTTAATATAAGGGTCTTGTCCAATAATCACAACTTT 2055218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 400422395119852