Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 111 4e-19 >seq1 Length=19924566 Score = 111 bits (122), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | || || || ||||||||||| | || ||||| | | ||| | || Sbjct 18441600 TCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCC 18441541 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || || || || ||||||| |||||| || || ||||| ||||| || Sbjct 18441540 TTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTT 18441481 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| ||||| || | ||| || || | ||| | ||| || ||||| ||||| Sbjct 18441480 TTCTTGAATCTTAGCTTTAATAGCATCAATAGAGTCATTTGGTTCGACTTCTAATGTGAT 18441421 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA-TGGTTACTTA 225727 ||||| || || | |||||| | || | |||||||| | | || ||||| Sbjct 18441420 AGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCATTTGATTAGTAACTTA 18441370 Score = 102 bits (112), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | || || || ||||||||||| | || ||||| | | |||| | || Sbjct 3528329 TCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTTTTTCC 3528388 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || || || || ||||||| |||||| || || ||||| ||||| || Sbjct 3528389 TTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTT 3528448 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| ||| | ||| || || | || | ||| || ||||| ||||| Sbjct 3528449 TTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTGAT 3528508 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || | || || | || | |||||| Sbjct 3528509 AGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 3528544 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | || || || ||||||||||| | || ||||| | | ||| | || Sbjct 12568386 TCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCC 12568327 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || || || || ||||||| |||||| || || ||||| ||||| || Sbjct 12568326 TTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTT 12568267 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| ||| | ||| || || | || | ||| || ||||| ||||| Sbjct 12568266 TTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTGAT 12568207 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || | || || | || | |||||| Sbjct 12568206 AGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12568171 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | || || || ||||||||||| | || ||||| | | ||| | || Sbjct 12575272 TCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCC 12575213 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || || || || ||||||| |||||| || || ||||| ||||| || Sbjct 12575212 TTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTT 12575153 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| ||| | ||| || || | || | ||| || ||||| ||||| Sbjct 12575152 TTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTGAT 12575093 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || | || || | || | |||||| Sbjct 12575092 AGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12575057 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | || || || ||||||||||| | || ||||| | | ||| | || Sbjct 16561171 TCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCC 16561230 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || || || || ||||||| |||||| || || ||||| ||||| || Sbjct 16561231 TTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTT 16561290 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| ||| | ||| || || | || | ||| || ||||| ||||| Sbjct 16561291 TTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTGAT 16561350 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || | || || | || | |||||| Sbjct 16561351 AGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 16561386 Score = 91.5 bits (100), Expect = 4e-13 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT-TC-TC 225555 ||| | ||| | || || || ||||||||||| | || ||||| | ||||| || | Sbjct 4820758 TCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTG--AAAGTGTCTTT 4820815 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||||| || || || || || ||||||| |||||| || || ||||| ||||| Sbjct 4820816 CCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGGAATTCCTTCT 4820875 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || ||||| ||||| || | ||| || || | || | ||| || ||||| || Sbjct 4820876 TTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTCAACTTCTAATGTA 4820935 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| || || | || || | || | ||||||||| Sbjct 4820936 ATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 4820976 Score = 91.5 bits (100), Expect = 4e-13 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT-TC-TC 225555 ||| | ||| | || || || ||||||||||| | || ||||| | ||||| || | Sbjct 17036765 TCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTG--AAAGTGTCTTT 17036708 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||||| || || || || || ||||||| |||||| || || ||||| ||||| Sbjct 17036707 CCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGGAATTCCTTCT 17036648 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || ||||| ||||| || | ||| || || | || | ||| || ||||| || Sbjct 17036647 TTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTCAACTTCTAATGTA 17036588 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| || || | || || | || | ||||||||| Sbjct 17036587 ATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 17036547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531184720694