Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 >seq1 Length=19924566 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | || | ||||||||||||||||| || ||||| | Sbjct 3528318 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 3528377 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | |||||| ||||| |||||||| || ||| | ||||| |||||||| ||| || Sbjct 3528378 AGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 3528437 Query 101132 ACGCCTTCTTTGTC 101145 | |||||||| || Sbjct 3528438 ATTCCTTCTTTTTC 3528451 Score = 89.7 bits (98), Expect = 4e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 100979 TTATTATTAGTACTAATACAGTTATTACTATTGCCGCCTCGCAATCTTAACACCATGTGC 101038 ||||||| | | || | || ||||| || || |||| |||||||| || | || Sbjct 12568430 TTATTATAATGAATAGTTCAATTATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGA 12568371 Query 101039 AAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTG 101098 | ||||||||||||||||| || ||||| | | ||| || ||||| |||||||| Sbjct 12568370 AGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTT 12568311 Query 101099 CCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTC 101145 || ||| | ||||| |||||||| ||| || | |||||||| || Sbjct 12568310 CCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTC 12568264 Score = 89.7 bits (98), Expect = 4e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 100979 TTATTATTAGTACTAATACAGTTATTACTATTGCCGCCTCGCAATCTTAACACCATGTGC 101038 ||||||| | | || | || ||||| || || |||| |||||||| || | || Sbjct 12575316 TTATTATAATGAATAGTTCAATTATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGA 12575257 Query 101039 AAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTG 101098 | ||||||||||||||||| || ||||| | | ||| || ||||| |||||||| Sbjct 12575256 AGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTT 12575197 Query 101099 CCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTC 101145 || ||| | ||||| |||||||| ||| || | |||||||| || Sbjct 12575196 CCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTC 12575150 Score = 89.7 bits (98), Expect = 4e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 100979 TTATTATTAGTACTAATACAGTTATTACTATTGCCGCCTCGCAATCTTAACACCATGTGC 101038 ||||||| | | || | || ||||| || || |||| |||||||| || | || Sbjct 16561127 TTATTATAATGAATAGTTCAATTATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGA 16561186 Query 101039 AAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTG 101098 | ||||||||||||||||| || ||||| | | ||| || ||||| |||||||| Sbjct 16561187 AGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTT 16561246 Query 101099 CCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTC 101145 || ||| | ||||| |||||||| ||| || | |||||||| || Sbjct 16561247 CCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTC 16561293 Score = 86.0 bits (94), Expect = 5e-12 Identities = 166/241 (69%), Gaps = 13/241 (5%) Strand=Plus/Minus Query 100910 TTATTTTAATAAAACAAT--AAATGT---ATTAAATTTAACATTGTATTTTATTTTGTTA 100964 ||||| ||||||| ||| |||| | ||| ||||| | |||||| ||||| || Sbjct 18441710 TTATTAAAATAAAATAATTGAAATATCATATTTAATTTTA-ATTGTAGTTTATGTT---- 18441656 Query 100965 CATACATGCACACATTATTATTAGTACTAATACAGTTATTACTATTGCCGCCTCGCAATC 101024 || || || ||| | || | | || | | ||||| || || |||| |||| Sbjct 18441655 --TA-ATTCAAACAAAAATAAAAAGAATATTTTAATTATTTTAATATCCTCCTCTTAATC 18441599 Query 101025 TTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAAT 101084 |||| || | || | ||||||||||||||||| || ||||| | | ||| || | Sbjct 18441598 TTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTT 18441539 Query 101085 CTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGT 101144 |||| |||||||| || ||| | ||||| |||||||| ||| || | |||||||| | Sbjct 18441538 CTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTT 18441479 Query 101145 C 101145 | Sbjct 18441478 C 18441478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409660795007259