Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 2e-15 >seq1 Length=19924566 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||||||||| ||||| || || | ||| || || || |||| |||||| || ||||| Sbjct 3528353 TTCTTTTTGAATGTTATAATCTGAAAGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAA 3528412 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | |||||| || ||||| || || || ||||||||||| || || | | Sbjct 3528413 AATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGC 3528472 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||| |||| || | ||||||||| | ||||| || || || || | |||||||| Sbjct 3528473 ATCAATAGAATCATTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAAC 3528532 Query 283088 GAATATCTGCAT 283099 ||||| ||||| Sbjct 3528533 AAATATTTGCAT 3528544 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||||||||| ||||| || || | ||| || || || |||| |||||| || ||||| Sbjct 12568362 TTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAA 12568303 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | |||||| || ||||| || || || ||||||||||| || || | | Sbjct 12568302 AATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGC 12568243 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||| |||| || | ||||||||| | ||||| || || || || | |||||||| Sbjct 12568242 ATCAATAGAATCATTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAAC 12568183 Query 283088 GAATATCTGCAT 283099 ||||| ||||| Sbjct 12568182 AAATATTTGCAT 12568171 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||||||||| ||||| || || | ||| || || || |||| |||||| || ||||| Sbjct 12575248 TTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAA 12575189 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | |||||| || ||||| || || || ||||||||||| || || | | Sbjct 12575188 AATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGC 12575129 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||| |||| || | ||||||||| | ||||| || || || || | |||||||| Sbjct 12575128 ATCAATAGAATCATTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAAC 12575069 Query 283088 GAATATCTGCAT 283099 ||||| ||||| Sbjct 12575068 AAATATTTGCAT 12575057 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||||||||| ||||| || || | ||| || || || |||| |||||| || ||||| Sbjct 16561195 TTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAA 16561254 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | |||||| || ||||| || || || ||||||||||| || || | | Sbjct 16561255 AATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGC 16561314 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||| |||| || | ||||||||| | ||||| || || || || | |||||||| Sbjct 16561315 ATCAATAGAATCATTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAAC 16561374 Query 283088 GAATATCTGCAT 283099 ||||| ||||| Sbjct 16561375 AAATATTTGCAT 16561386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739186588654