Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 5e-13 >seq1 Length=19924566 Score = 89.7 bits (98), Expect = 5e-13 Identities = 201/300 (67%), Gaps = 14/300 (5%) Strand=Plus/Minus Query 64426 TGATGTTATTGGAATTGATGAAGGGCAATTTTTTACTGATATAGTTGAATTTTCTGA-AA 64484 ||| |||||||| ||||||||||| || || || | || || | || ||||| || Sbjct 4694618 TGAAGTTATTGGTATTGATGAAGGTCAGTTCTTCCCAGACTTAATAGAGTTTTCAGAGGC 4694559 Query 64485 ATATGGCCAATAAAGGAAAAATTGTAATTGTTTCAGCGTTAGATGCGACATATAAAAGAG 64544 || | || | | | |||| | | ||||| | |||| ||||||| |||| ||||| Sbjct 4694558 ATGT-GCAAGTTATGGAAGATTGGTAATCATAGCAGCATTAGATGGTACATTCCAAAGAA 4694500 Query 64545 AACCATTTGGTAATATCCTAAATCTAGTTCCATTAGCTGAAAAAGTAATAAAATTAAATG 64604 |||||||||| | || |||| |||||||| ||||| |||| ||| |||| || Sbjct 4694499 AACCATTTGGACAAATTACTGATCTTATTCCATTATGTGAAAGCGTAAAAAAGTTAAGTG 4694440 Query 64605 CTATATGTAAAATATGTTTCAAAGATGCTGCATTTACTAAAAGATTATGCAAAAGTACTG 64664 || | ||| | ||| ||| | || || ||| | |||| | | ||| | | Sbjct 4694439 CTGTTTGTGTTAATTGTGGTAAAAAAGCAGCTTTTTC------ATTAAGAACCAGTTCAG 4694386 Query 64665 A------AATCGAATTAATTGGTGGAGAGGACAAATATAGTTCCGTGTGTAGAAAGTGTT 64718 | ||| ||| | ||||| |||| || |||||| || | || |||||||| |||| Sbjct 4694385 AAGAATCAATTGAAGTTATTGGAGGAGTAGATAAATATTGTGCTGTCTGTAGAAAATGTT 4694326 Score = 84.2 bits (92), Expect = 2e-11 Identities = 251/378 (66%), Gaps = 12/378 (3%) Strand=Plus/Minus Query 21075 GATCCAAAACCTTTATCCCCCCTTTCAGTAAAATTTATAT-TATCACATTTAACAATGGT 21133 |||||||| ||||| || || ||| || | |||| | | |||| | | |||| | Sbjct 14620147 GATCCAAATCCTTTCTCTCCTCTTATTGTTTCACTTATTTCTTTCACTTCTT-CAATTTT 14620089 Query 21134 ACAGTTGTAATATTTTT-CAAAAATTATTTGTGCTACTCTATCACC---CTTAGAAATAT 21189 ||| |||| ||||||| ||| ||| | |||||| |||||||| || ||| | ||| Sbjct 14620088 ACA-TTGTTTTATTTTTTCAATAATAAGTTGTGCAACTCTATCTCCTTTCTTGCATCTAT 14620030 Query 21190 GAAATGTAGATTTTCCATTATTAATTAGAATAATTCCAACAATACCTCTATAATCCCTAT 21249 || ||| ||| || ||||| || || | | | ||||||||||| || Sbjct 14620029 ---ATATAGTATTTGAATGATTAAATACTATTACTTTTATTTCTCCTCTATAATCTTCAT 14619973 Query 21250 CTATAACACCTCCACCGATATCAATATTTTTATTTAAG-GATAATCCTGATCTTGACGCT 21308 | ||||| ||||| || |||||||| | ||||||| | |||| ||| | || || Sbjct 14619972 CAATAACTCCTCCTCCAATATCAAT-TCCATATTTAATTGCTAATGATGAACCTGGTGCA 14619914 Query 21309 ATTCTACCATAATATCCTTCTGGTATTTCTAGGACAATGTCAGTTTTTACTAACATTCGT 21368 |||||||||||| | | ||| |||| || |||| | || | ||| || Sbjct 14619913 ATTCTACCATAACAGAAATGTGGAATTTGTACAGCAATTCCTGTAGAAATTAAACATCTA 14619854 Query 21369 TCTTGTGGGTTTATATCATAGTCATACGCGCTATAAAGATCAAAACCTGCAGAGTCTGGA 21428 || ||||| | ||| || |||| |||||| | |||||||||| | || | | Sbjct 14619853 TCATGTGGATAAATAATATTATCATCAATGCTATATAAATCAAAACCTACTGATTGTTCT 14619794 Query 21429 GTTGATTTTGTAGGAATA 21446 ||| | ||||||||||| Sbjct 14619793 GTTCCTCTTGTAGGAATA 14619776 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/194 (70%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 159623 ATTTCCAAAAAGAACAACAAATATTGGTAAATTAATTACTTTATATCTAGAAAAGAAAAT 159682 |||||| | ||| |||| ||||||| ||||||||| | || ||| | | ||| Sbjct 4962248 ATTTCCTGATAGATCAACGGATATTGGAAAATTAATTGATGAATTTCTTCAT--GGAAAG 4962191 Query 159683 AGATTTGGAACCACATAGTGTACATTTACTATTTTCTGCAAATAGATGGGAACACGTTCC 159742 | |||| || ||| ||| |||||||| | |||||| |||||||||||| || || Sbjct 4962190 A-ATTTACCACAACAAGTTGTTCATTTACTTTATTCTGCTAATAGATGGGAAGTCGCTCA 4962132 Query 159743 ATTAATAGAAGAAAAAATAAATAAAGGTATTAATCTTGTTGTTGATAGATATGCATTCTC 159802 | || |||||| || | ||||| |||| | || || |||||||||||| || Sbjct 4962131 AAACATTAAAGAAACTTTAGAGAAAGGAATTACTGTTATTTGTGATAGATATGCTTTTAG 4962072 Query 159803 TGGTATTGCATATA 159816 ||| |||| |||| Sbjct 4962071 TGGAATTGTTTATA 4962058 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/194 (70%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 3577 TATATGCAATACCAGAGAATGCATATCTATCAACAACAAGATTAATACCTTTATTTATTT 3636 |||| |||| ||| || |||||||||||| || || | |||| ||||| | || Sbjct 4962058 TATAAACAATTCCACTAAAAGCATATCTATCACAAATAACAGTAATTCCTTTCTCTAAAG 4962117 Query 3637 TTTCTTCTATTAATGGAACGTGTTCCCATCTATTTGCAGAAAATAGTAAATGTACACTAT 3696 |||||| || | || || |||||||||||| |||||| | |||||||| ||| | Sbjct 4962118 TTTCTTTAATGTTTTGAGCGACTTCCCATCTATTAGCAGAATAAAGTAAATGAACAACTT 4962177 Query 3697 GTGGTTCCAAATCTATTTTCTTTTCTAGATATAAAGTAATTAATTTACCAATATTTGTTG 3756 || || |||| | ||| | | ||| || | ||||||||| ||||||| |||| Sbjct 4962178 GTTGTGGTAAAT-TCTTTCC--ATGAAGAAATTCATCAATTAATTTTCCAATATCCGTTG 4962234 Query 3757 TTCTTTTTGGAAAT 3770 ||| | |||||| Sbjct 4962235 ATCTATCAGGAAAT 4962248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487993481400