Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 >seq1 Length=19924566 Score = 118 bits (130), Expect = 1e-21 Identities = 390/602 (65%), Gaps = 26/602 (4%) Strand=Plus/Minus Query 155871 TTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAAC 155930 ||||||||||||| | || | |||||| |||| ||||||||| || | | ||| | Sbjct 5272601 TTTAAAATTTGAACTCTACCATGTTCATCTGGTAGTCCAATTTCAATTTGAACTTCAAGT 5272542 Query 155931 CGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATT 155990 | || ||||||||||| || ||||| | | || ||| || ||||| || || | Sbjct 5272541 CTTCCTGGTCTTAATAAAGCATCGTCTAACATATCCATTCTATTAGTCATTCCAATAACA 5272482 Query 155991 AAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTACGGCG 156050 | ||| || ||||| | | || || || || ||| |||||||| ||||| | | Sbjct 5272481 AGAATATTATTTAATGCATTAACTCCATCAATCTTACTTAATAATTGGTTGACAATAGTA 5272422 Query 156051 TCG-----TGC-GTGGCGTTATCAC------CGCGTTTTTTACACAGAGCATCTATTTCA 156098 || | | || | | || || | | || |||||| | |||||||| |||| Sbjct 5272421 TCAGATACTCCAGTAGAATCATTACGACTTCCTCTTTGTTTACAAATAGCATCTAATTCA 5272362 Query 156099 TCGAAGACGATAACGTGTAATCCGCTGGCTA--AAC-CCAATTTNNNNNNNNNNNNNNN- 156154 || | | |||| ||| | | || ||| | | || ||| Sbjct 5272361 TCAAGAATAATAATGTGGAGT----TGACTATCATCTCCTCTTTGATTCTGTTCAGCCTC 5272306 Query 156155 AGCCTCTTGAAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAA 156214 ||||||| ||| || ||||| |||||||| || || || |||||||| || || || Sbjct 5272305 AGCCTCTGCAAATAAGTTTCTGATATTAGCTTCTGACTCTCCGACATATTTATT-AAGAA 5272247 Query 156215 TTCA-GGACCGTTAACTATTTTGACGGGTCGTGATTTAAAAGC--TTGAGCGATACAGCG 156271 | | ||||| | ||||| ||| || || | | ||| | || | | || | Sbjct 5272246 TGGATGGACCTTCAACTAATTTA--GGTTCAACAGATGAAACCATTTTACCTATTTGTCT 5272189 Query 156272 AGCCATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTT 156331 |||||||| ||||| || || || || ||||| |||||||| | |||||| | |||||| Sbjct 5272188 TGCCATTAAAGTTTTTCCACATCCTGGTGGTCCATATAACAAAATTCCTTTAACATGTTT 5272129 Query 156332 ACAACCTAATTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAA 156391 | ||||||||||| | | ||||| |||| | || ||||||||||| | Sbjct 5272128 AATACCTAATTTTTTAATAGTTTCTGATGGAAACATACGAGACATAAATGCTCTTCTTAG 5272069 Query 156392 AATGAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAATTTAT 156451 ||| | ||||||||| || | ||| || || |||||| | || ||| ||||| | Sbjct 5272068 AATATCTGTAAATTCTTTGTCAAGTCCACCAACTCCCATTCCTTCTGGATTAAAATTTTT 5272009 Query 156452 AG 156453 || Sbjct 5272008 AG 5272007 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 63744 AATACCAGAAATAGGTGATAAATTTGCTTCTTTTACA-GCTCAAAAAGGTACGTGTGGTA 63802 ||| ||| |||| || |||||||| |||| ||| | |||||||| || ||||| Sbjct 1821366 AATTCCACAAATTGGAGATAAATTCTCTTCAAG-ACATGGACAAAAAGGAACAGTTGGTA 1821424 Query 63803 TGATTTATCGACAAGAAGATATGCCTTTTACCAAAGACGGTATCGTACCCGATCTCGTCA 63862 ||| |||| |||||||||||||||| ||||| | || || || ||| || || | | Sbjct 1821425 TGACTTATAGACAAGAAGATATGCCATTTACAATTGAAGGAATTTCACCAGACATCATTA 1821484 Query 63863 TCAATCCACACGCTTTTCCCAGTCGTATGACCGTT 63897 | || ||||| ||| |||| ||||||||| ||| Sbjct 1821485 TGAACCCACATGCTATTCCATCTCGTATGACAGTT 1821519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667075191661560