Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 138 3e-27 >seq1 Length=19924566 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || ||||| || ||||| | || || ||| ||| Sbjct 18441388 CAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACATTAGAAGTCGAACCAAATGAC 18441447 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || | ||| |||||||| || ||||||||||| || || || || ||| Sbjct 18441448 TCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCAGATCAACAA 18441507 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || |||||||| | ||||| |||| ||||||| | ||||||||| | Sbjct 18441508 AGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAACATT 18441567 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||||||||| ||| | || || ||| | ||| Sbjct 18441568 CAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGA 18441606 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| |||||||| ||||| | || || ||| || Sbjct 12568174 CAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAATGAT 12568233 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || | || ||||| || || ||||||||||| || || || || ||| Sbjct 12568234 TCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAACAA 12568293 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || |||||||| | ||||| |||| ||||||| | ||||||||| | Sbjct 12568294 AGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAACATT 12568353 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||||||||| ||| | || || ||| | ||| Sbjct 12568354 CAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGA 12568392 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| |||||||| ||||| | || || ||| || Sbjct 12575060 CAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAATGAT 12575119 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || | || ||||| || || ||||||||||| || || || || ||| Sbjct 12575120 TCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAACAA 12575179 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || |||||||| | ||||| |||| ||||||| | ||||||||| | Sbjct 12575180 AGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAACATT 12575239 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||||||||| ||| | || || ||| | ||| Sbjct 12575240 CAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGA 12575278 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| |||||||| ||||| | || || ||| || Sbjct 16561383 CAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAATGAT 16561324 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || | || ||||| || || ||||||||||| || || || || ||| Sbjct 16561323 TCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAACAA 16561264 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || |||||||| | ||||| |||| ||||||| | ||||||||| | Sbjct 16561263 AGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAACATT 16561204 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||||||||| ||| | || || ||| | ||| Sbjct 16561203 CAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGA 16561165 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| |||||||| ||||| | || || ||| || Sbjct 3528541 CAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAATGAT 3528482 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || | || ||||| || || ||||||||||| || || || || ||| Sbjct 3528481 TCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAACAA 3528422 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || |||||||| | ||||| |||| |||||| | ||||||||| | Sbjct 3528421 AGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAAACTCTTTCAGATTATAACATT 3528362 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||||||||| ||| | || || ||| | ||| Sbjct 3528361 CAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGA 3528323 Score = 118 bits (130), Expect = 3e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||| || ||||||||||| || || || || ||| ||||||| || || || ||| Sbjct 4820889 AAGATTCAAGAAAAAGAAGGAATTCCACCTGATCAACAAAGACTTATTTTTGCAGGCAAA 4820830 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || | ||||| |||| ||| ||| | ||||||||| | ||||||||||||||||| ||| Sbjct 4820829 CAATTAGAAGAAGGAAAGACACTTTCAGATTATAACATTCAAAAAGAATCAACACTTCAT 4820770 Query 178125 CTTGTTTTGAGACTCAGA 178142 | || || ||| | ||| Sbjct 4820769 TTAGTCTTAAGATTAAGA 4820752 Score = 118 bits (130), Expect = 3e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||| || ||||||||||| || || || || ||| ||||||| || || || ||| Sbjct 17036634 AAGATTCAAGAAAAAGAAGGAATTCCACCTGATCAACAAAGACTTATTTTTGCAGGCAAA 17036693 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || | ||||| |||| ||| ||| | ||||||||| | ||||||||||||||||| ||| Sbjct 17036694 CAATTAGAAGAAGGAAAGACACTTTCAGATTATAACATTCAAAAAGAATCAACACTTCAT 17036753 Query 178125 CTTGTTTTGAGACTCAGA 178142 | || || ||| | ||| Sbjct 17036754 TTAGTCTTAAGATTAAGA 17036771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731184577194