Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6446 116 8e-21 seq6480 84.2 5e-11 seq5599 84.2 5e-11 seq4898 84.2 5e-11 seq2450 84.2 5e-11 seq2384 84.2 5e-11 seq2040 84.2 5e-11 seq1810 84.2 5e-11 seq1748 84.2 5e-11 seq1082 84.2 5e-11 >seq6446 Length=1463 Score = 116 bits (128), Expect = 8e-21 Identities = 251/373 (67%), Gaps = 2/373 (1%) Strand=Plus/Minus Query 61091 AGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACTCC 61150 ||| || || |||||| ||| ||| | || | ||||||||| ||||| |||| ||||| Sbjct 1079 AGCCTCGACCTCTGAAATGTTCGGAGACGTCCGAGAAATTCCCCAAACCGAAAAAACTCC 1020 Query 61151 GTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAAAA 61210 || || || || || || | ||| ||| | | | || |||||| ||| Sbjct 1019 CTTCTACCCCCGCTCTCCCTACGCATGTGCCAAAGTCTTTTCCTATTGGATTGTCGTAAA 960 Query 61211 TTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAGTCC 61270 ||||| || | ||||||||| || | || |||| |||||||||||||| || Sbjct 959 CTACCGAGAAGCCTATGGAATGCATGGTTCCAATGGTATTTTATTCAATCACGAGAGCCC 900 Query 61271 CAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTTTTAA 61330 | || |||| | || ||||| | ||| | || | || ||| | | || | Sbjct 899 AAGGAGGGGTCCTACTTTCGTGACGAGGAAAGTGACCAGGGGGGTGGTGAGGATCGC-AG 841 Query 61331 CGGTGTCGAAAAA-TGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGATATG 61389 ||| | | | | || |||| | ||||| | || || | |||||||||||| ||| Sbjct 840 CGGGGACTCAGGAGTGTTTGTACATGGGAAATTTGGATTCGAGAAGAGATTGGGGGCATG 781 Query 61390 CGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGACTACG 61449 | | || ||| ||||||| |||||||||||| ||||||| |||| || ||||||| | Sbjct 780 CTAAGGAGTATGTCGAGGCGATGTGGTTGATGCTGCAACAGGATAAGCCCGATGACTTTG 721 Query 61450 TTATTGCGACTGG 61462 | |||| ||| || Sbjct 720 TGATTGGGACAGG 708 >seq6480 Length=1443 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 439 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 384 >seq5599 Length=10534 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 3819 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 3764 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 4245 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 4190 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 5017 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 4962 >seq4898 Length=1802 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 225 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 280 >seq2450 Length=27238 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 656 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 711 >seq2384 Length=3133 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 1887 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 1942 >seq2040 Length=43478 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 7957 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 7902 >seq1810 Length=5350 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 3830 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 3885 >seq1748 Length=7033 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 893 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 838 >seq1082 Length=11652 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 4471 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 4526 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 4855 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 4910 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 5080 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 5025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057697560611270