Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq7817 98.7 8e-16 >seq7817 Length=11892 Score = 98.7 bits (108), Expect = 8e-16 Identities = 209/306 (68%), Gaps = 12/306 (4%) Strand=Plus/Plus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 |||||||| ||||| || || || || |||||| | || ||||| || | || | || Sbjct 4045 GGGGACCTGGGCCCGATCTATGGATTTCAGTGGCGCCACTTTGGGGCAAAGTACACTGAT 4104 Query 18849 TGTCAATCAAACTATTTACAG--CAAGGAATCGATCAGCTG---CAAACTGTTATAGATA 18903 || | |||| || | ||||| | || |||||| ||| || || || | Sbjct 4105 ATGCATGCCGACTAC--ACTGGACAAGGCGTGGACCAGCTGGCGCAA---GTAATCGAAA 4159 Query 18904 CAATTAAAACAAACCCAGAAAGC-CGACGAATGATTATATCGTCTTGGAATCCAAAGGAT 18962 || || | ||||| || || ||||| || || || || | ||||| || || Sbjct 4160 AGATCAAGAACAACCC-GACAGATCGACGTATCATCATGTCTGCGTGGAACCCGTCGGCG 4218 Query 18963 ATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGT 19022 ||||| ||||| ||| || |||||||||| ||| || ||||| | ||| | || || Sbjct 4219 ATCCCAGAAATGGCACTTCCCCCATGTCACATGTTTTGCCAGTTCTTTGTTTCGAATGGA 4278 Query 19023 GAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAAC 19082 ||||| || ||| | ||||| | || | ||||||||||||||||| || |||||| Sbjct 4279 GAATTGTCGTGCTTGATGTACCAACGGTCCTGTGATATGGGCCTTGGGGTCCCCTTCAAC 4338 Query 19083 ATTGCT 19088 |||||| Sbjct 4339 ATTGCT 4344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399458577518805