Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq7817 89.7 4e-13 >seq7817 Length=11892 Score = 89.7 bits (98), Expect = 4e-13 Identities = 318/497 (64%), Gaps = 0/497 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 || |||||||| | | ||| || | |||||| ||||||||| || || || || | Sbjct 4379 ACTTGAGCAATGAGCCGAGTCAACAAAGAATACGAAGCAATGTTGAAGGGGACCCCAAGG 4320 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAAT 101875 ||||||||| || | ||| |||| || || | | ||||| | ||| | || Sbjct 4319 CCCATATCACAGGACCGTTGGTACATCAAGCACGACAATTCTCCATTCGAAACAAAGAAC 4260 Query 101876 TGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCA 101935 || | || | ||||| || || | |||||| || || | || ||||| ||| Sbjct 4259 TGGCAAAACATGTGACATGGGGGAAGTGCCATTTCTGGGATCGCCGACGGGTTCCACGCA 4200 Query 101936 CACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAAT 101995 |||| | || | || |||||| ||||| | || || | || || | || | Sbjct 4199 GACATGATGATACGTCGATCTGTCGGGTTGTTCTTGATCTTTTCGATTACTTGCGCCAGC 4140 Query 101996 TGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGC 102055 ||||| || |||| ||| | || ||| | | | | || | ||| || || || Sbjct 4139 TGGTCCACGCCTTGTCCAGTGTAGTCGGCATGCATATCAGTGTACTTTGCCCCAAAGTGG 4080 Query 102056 CTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGT 102115 | ||||||||||||||| | || || || || || | || | | || ||||| Sbjct 4079 CGCCACTGAAATCCATAGATCGGGCCCAGGTCCCCAACCTCACGATGATTCAAACCGGAC 4020 Query 102116 TTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGC 102175 ||||| | || | || ||||| ||||||||||| | || || | | | ||| Sbjct 4019 TTATCGAGGAACTCGCGCGACCCATTGGCATCCCAAATTCGAACCCCCTTTTCCGTCAGC 3960 Query 102176 TCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAA 102235 |||| || || | || ||||||||| | |||||| ||| ||| ||||||||| Sbjct 3959 GTGTTGCCGTTGGTGGCCCCAGCGATAAACCAGAGCAGTTCCTCAGCAAGCCCTCTCCAA 3900 Query 102236 AATACTCTCTTAGTAGT 102252 || || | ||| || || Sbjct 3899 AAGACACGCTTCGTGGT 3883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361210126754579