Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1860 89.7 4e-13 seq2450 87.8 2e-12 seq1856 82.4 7e-11 >seq1860 Length=4765 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || |||||||| ||| | ||||| |||||||| || ||||||||| || || || Sbjct 2644 AACATGCAAATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAGTCC 2585 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | | | ||||| ||||| || || ||||| | ||| || Sbjct 2584 TCCGATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGAC 2525 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 |||||| || | ||||| || ||||| || || || ||| ||| | |||||||| Sbjct 2524 CAACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTAC 2465 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || || |||||||||||||| ||| |||| Sbjct 2464 AACATCCAAAAGGAATCTACTCTCCACTTGGT 2433 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| |||||||| || ||||||||| || || || | Sbjct 1957 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAGTCCTCC 1898 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| ||||| || || ||||| | ||| || ||| Sbjct 1897 GATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGACCAA 1838 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| || | ||||| || ||||| || || || ||| ||| | |||||||||| Sbjct 1837 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACAAC 1778 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || |||||||||||||| ||| |||| Sbjct 1777 ATCCAAAAGGAATCTACTCTCCACTTGGT 1749 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| |||||||| || ||||||||| || || || | Sbjct 2413 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAGTCCTCC 2354 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| ||||| || || ||||| | ||| || ||| Sbjct 2353 GATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGACCAA 2294 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| || | ||||| || ||||| || || || ||| ||| | |||||||||| Sbjct 2293 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACAAC 2234 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || |||||||||||||| ||| |||| Sbjct 2233 ATCCAAAAGGAATCTACTCTCCACTTGGT 2205 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| |||||||| || || |||||| || || || | Sbjct 1729 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACTATTACCCTTGAGGTCGAGTCCTCC 1670 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| ||||| || || ||||| | ||| || ||| Sbjct 1669 GATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGACCAA 1610 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| || | ||||| || ||||| || || || ||| ||| | |||||||||| Sbjct 1609 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACAAC 1550 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || || |||||||||||||| ||| |||| || || | || || ||| Sbjct 1549 ATCCAAAAGGAATCTACTCTCCACTTGGTCTTGCGCCTTCGTGGTGGG 1502 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| |||||||| || || |||||| || || || | Sbjct 2185 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACTATTACCCTTGAGGTCGAGTCCTCC 2126 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | |||||||| ||| || || ||||| | || || ||| Sbjct 2125 GACACCATCCAAGCTGTGAAGCAAAAGATTCAAGACAAGGAAGGGATCCCTCCTGACCAA 2066 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| || | ||||| || || || ||| ||||||| | || | |||||||||| Sbjct 2065 CAACGATTGATCTTCGCCGGAAAGCAATTGGAAGACGGCCGGACCCTTTCCGATTACAAC 2006 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || ||||||||||||||||| ||| | || || || Sbjct 2005 ATCCAGAAGGAATCTACTCTCCACTTAGTCTTGCG 1971 >seq2450 Length=27238 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| |||||||| || || |||||| || || | | Sbjct 7212 ATGCAGATTTTCGTAAAAACTTTGACGGGAAAGACAATTACCCTGGAGGTCGAGTCTTCT 7271 Query 29022 GAGACGGTGGCCGATC--TTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATC 29079 || || | || | | | |||||||||||| || || |||||| | ||| || | Sbjct 7272 GACACCAT--CCAAGCCGTCAAGCAAAAAATTCAAGACAAGGAAGGTATTCCCCCTGACC 7329 Query 29080 AACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACA 29139 ||||| || | ||||| || ||||| || || || || ||| | ||||||||| Sbjct 7330 AACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACA 7389 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGT 29170 | || ||||||||||||||||| ||| |||| Sbjct 7390 ACATCCAGAAGGAATCTACTCTCCACTTGGT 7420 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| ||||||| | || || || || || || |||| || || | Sbjct 9352 ATGCAGATCTTCGTCAAAACGCTCACCGGTAAGACTATCACTCTCGAAGTCGAGTCCTCC 9411 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| ||||| || || |||||| | ||| || ||| Sbjct 9412 GATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 9471 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| || | ||||| || ||||| || || || || ||| | |||||||||| Sbjct 9472 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACAAC 9531 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||||||||||||| |||| || || | || ||||| Sbjct 9532 ATCCAGAAGGAATCTACTCTTCACTTGGTCTTGCGCCTTCGTGGAGG 9578 >seq1856 Length=6291 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || || || || || || |||| || | | Sbjct 5972 ATGCAAATCTTCGTCAAAACCCTCACCGGTAAGACTATCACTCTCGAAGTCGAGTCTTCC 6031 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| ||||| || || |||||| | ||| || ||| Sbjct 6032 GATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGTATTCCCCCCGACCAA 6091 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || ||||| || || || ||| ||||||| | || | |||||||||| Sbjct 6092 CAACGCCTCATCTTCGCCGGAAAGCAATTGGAAGACGGCCGCACCCTTTCCGATTACAAC 6151 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || ||||||||||||||||| ||| |||| || || Sbjct 6152 ATCCAGAAGGAATCTACTCTCCACTTGGTCTTGCG 6186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428287299401495