Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq7817 158 1e-33 >seq7817 Length=11892 Score = 158 bits (174), Expect = 1e-33 Identities = 417/629 (66%), Gaps = 6/629 (1%) Strand=Plus/Minus Query 145642 AGCCTGGGAAAGGGCCGGGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTT 145700 ||| ||||||| |||| || ||| || ||| ||| ||| |||||||| |||||||| Sbjct 4496 AGCTTGGGAAATGGCCTCGG-CTCTCTCTTCAACTGCTCCTTGAGGGGCTCGACGTGGTT 4438 Query 145701 GAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAG 145760 ||||| || ||| || ||| ||| | ||| || || | || ||| || | Sbjct 4437 CTTATAGACATGGTAGTCACCGAGGGTGTGCACGAATTCTCCAGCCTTGAGACCACAAAC 4378 Query 145761 GTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCC 145820 || || | | |||| || || || || ||||||||||| ||||| || || Sbjct 4377 TTGAGCAATGAGCCGAGTCAACAAAGAATACGAAGCAATGTTGAAGGGGACCCCAAGGCC 4318 Query 145821 CATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTG 145880 ||| || | || || ||||||| | ||| || | || || || || ||||||| Sbjct 4317 CATATCACAGGACCGTTGGTACATCAAGCACGACAATTCTCCATTCGAAACAAAGAACTG 4258 Query 145881 GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGT 145940 ||| | | ||| || || || || ||||| | || | ||| ||||||||| || | Sbjct 4257 GCAAAACATGTGACATGGGGGAAGTGCCATTTCTGGGATCGCCGACGGGTTCCACGCAGA 4198 Query 145941 GAGGACGAGCC-TCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCT 145999 | || || | || || ||||| || ||||||||| | || | | | |||| Sbjct 4197 CATGATGATACGTCGATCTGTCGGG-TTGTTCTTGATCTTTTCGATTACTTGCGCCAGCT 4139 Query 146000 GGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCAC-GTACGCGGCCCCGAAGTGC 146058 |||||||||| || || ||| || | | || | || |||| ||||| ||||| Sbjct 4138 GGTCCACGCCTTGTCCAGTGTAGTCGG-CATGCATATCAGTGTACTTTGCCCCAAAGTGG 4080 Query 146059 CTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCC 146118 | |||||| || || |||| || ||||||||||| ||| | || || |||| | Sbjct 4079 CGCCACTGAAATCCATAGATCGGGCCCAGGTCCCCAACCTCACGATGATTCAAACCGGAC 4020 Query 146119 CGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGC 146178 ||||||| || || ||||| ||||| ||||| || || ||| | | | ||| Sbjct 4019 TTATCGAGGAACTCGCGCGACCCATTGGCATCCCAAATTCGAACCCCCTTTTCCGTCAGC 3960 Query 146179 TCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAG 146238 ||| || |||| ||| ||| ||||||||||| || || | ||| ||||| Sbjct 3959 GTGTTGCCGTTGGTGGCCCCAGCGATAAACCAGAGCAGTTCCTCAGCAAGCCCTCTCCAA 3900 Query 146239 AAGACCCTCTTGGTGGTCAGCAGGGGGAA 146267 ||||| | ||| ||||| || |||||||| Sbjct 3899 AAGACACGCTTCGTGGTGAGGAGGGGGAA 3871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590007989669160