Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1860 95.1 1e-14 seq6235 84.2 2e-11 seq2450 84.2 2e-11 >seq1860 Length=4765 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||| || |||||||| ||||| || || | Sbjct 2415 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAA 2474 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| ||||| ||||| || | || | || || ||||| ||| Sbjct 2475 AGAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGG 2534 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCAC--CTGGCCGACAGTATCACCGGGCTCCG 21126 | |||||||||||| ||| || || ||||| || | || ||||| || ||| Sbjct 2535 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACAGCTTG--GATGGTATCGGAGGACTCGA 2592 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | |||||||||||| || || || ||||| || || |||||||| ||| Sbjct 2593 CCTCAAGGGTAATGGTCTTTCCCGTCAAAGTTTTCACGAAGATTTGCATGTTG 2645 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||| || |||||||| ||||| || || | Sbjct 1731 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAA 1790 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| ||||| ||||| || | || | || || ||||| ||| Sbjct 1791 AGAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGG 1850 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCAC--CTGGCCGACAGTATCACCGGGCTCCG 21126 | |||||||||||| ||| || || ||||| || | || ||||| || ||| Sbjct 1851 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACAGCTTG--GATGGTATCGGAGGACTCGA 1908 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||||||||| || || || ||||| || || || ||||| Sbjct 1909 CCTCAAGGGTAATGGTCTTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 1957 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||| || |||||||| ||||| || || | Sbjct 2187 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAA 2246 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| ||||| ||||| || | || | || || ||||| ||| Sbjct 2247 AGAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGG 2306 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCAC--CTGGCCGACAGTATCACCGGGCTCCG 21126 | |||||||||||| ||| || || ||||| || | || ||||| || ||| Sbjct 2307 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACAGCTTG--GATGGTATCGGAGGACTCGA 2364 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||||||||| || || || ||||| || || || ||||| Sbjct 2365 CCTCAAGGGTAATGGTCTTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 2413 >seq6235 Length=3334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||| || ||||| || ||||| || || | Sbjct 1430 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAA 1371 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||| ||||| || ||||| | || | || || ||||| ||| Sbjct 1370 AGAGTGCGACCGTCCTCAAGCTGCTTTCCCGCGAAGATCAATCGTTGTTGGTCAGGGGGG 1311 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC--CGACAGTATCACCGGGCTCCG 21126 | ||||||||||| ||||||||| ||||| ||| || || || || ||| Sbjct 1310 ATACCTTCCTTGTCTTGGATCTTTTGCTTCAC--GGCTTGGATGGTGTCGGAGGACTCGA 1253 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| ||||| || || || ||||| || || || ||||| Sbjct 1252 CCTCAAGGGTAATCGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 1204 >seq2450 Length=27238 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||| || |||||||| ||||| || || | Sbjct 7666 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAA 7607 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||| ||||| || || || | || | || || ||||| ||| Sbjct 7606 AGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGG 7547 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC--CGACAGTATCACCGGGCTCCG 21126 | ||||||||||| ||| || |||||||| ||| || || || || ||| Sbjct 7546 ATACCTTCCTTGTCTTGGATTTTCTGTTTCAC--GGCTTGGATGGTGTCGGAGGACTCGA 7489 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| ||||| || || || ||||| || || |||||||| Sbjct 7488 CCTCAAGGGTAATAGTCTTTCCCGTCAAAGTTTTTACGAAAATTTGCAT 7440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422211190316564