Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1860 89.7 4e-13 seq1856 82.4 6e-11 >seq1860 Length=4765 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || |||||||| ||| | ||||| |||||||| || ||||||||| || || || Sbjct 2644 AACATGCAAATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAGTCC 2585 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | | | ||||| ||||| || || ||||| | ||| || Sbjct 2584 TCCGATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGAC 2525 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 |||||| || | ||||| || ||||| || | || ||| ||| | |||||||| Sbjct 2524 CAACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTAC 2465 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGT 25243 || || ||||||||||||||||| ||| |||| Sbjct 2464 AACATCCAAAAGGAATCTACTCTCCACTTGGT 2433 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||| |||||||| || ||||||||| || || || | Sbjct 1957 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAGTCCTCC 1898 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | ||||| ||||| || || ||||| | ||| || ||| Sbjct 1897 GATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGACCAA 1838 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| || | ||||| || ||||| || | || ||| ||| | |||||||||| Sbjct 1837 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACAAC 1778 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || ||||||||||||||||| ||| |||| Sbjct 1777 ATCCAAAAGGAATCTACTCTCCACTTGGT 1749 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||| |||||||| || ||||||||| || || || | Sbjct 2413 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAGTCCTCC 2354 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | ||||| ||||| || || ||||| | ||| || ||| Sbjct 2353 GATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGACCAA 2294 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| || | ||||| || ||||| || | || ||| ||| | |||||||||| Sbjct 2293 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACAAC 2234 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || ||||||||||||||||| ||| |||| Sbjct 2233 ATCCAAAAGGAATCTACTCTCCACTTGGT 2205 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||| |||||||| || || |||||| || || || | Sbjct 1729 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACTATTACCCTTGAGGTCGAGTCCTCC 1670 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | ||||| ||||| || || ||||| | ||| || ||| Sbjct 1669 GATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGACCAA 1610 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| || | ||||| || ||||| || | || ||| ||| | |||||||||| Sbjct 1609 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACAAC 1550 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || ||||||||||||||||| ||| |||| || || | || || ||| Sbjct 1549 ATCCAAAAGGAATCTACTCTCCACTTGGTCTTGCGCCTTCGTGGTGGG 1502 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||| |||||||| || || |||||| || || || | Sbjct 2185 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACTATTACCCTTGAGGTCGAGTCCTCC 2126 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | |||||||| ||| || || ||||| | || || ||| Sbjct 2125 GACACCATCCAAGCTGTGAAGCAAAAGATTCAAGACAAGGAAGGGATCCCTCCTGACCAA 2066 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| || | ||||| || || || ||||||||||| | || | |||||||||| Sbjct 2065 CAACGATTGATCTTCGCCGGAAAGCAATTGGAAGACGGCCGGACCCTTTCCGATTACAAC 2006 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || |||||||||||||| ||| | || || || Sbjct 2005 ATCCAGAAGGAATCTACTCTCCACTTAGTCTTGCG 1971 >seq1856 Length=6291 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| | || || || || || || |||| || | | Sbjct 5972 ATGCAAATCTTCGTCAAAACCCTCACCGGTAAGACTATCACTCTCGAAGTCGAGTCTTCC 6031 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | ||||| ||||| || || |||||| | ||| || ||| Sbjct 6032 GATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGTATTCCCCCCGACCAA 6091 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | || ||||| || || || ||||||||||| | || | |||||||||| Sbjct 6092 CAACGCCTCATCTTCGCCGGAAAGCAATTGGAAGACGGCCGCACCCTTTCCGATTACAAC 6151 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || |||||||||||||| ||| |||| || || Sbjct 6152 ATCCAGAAGGAATCTACTCTCCACTTGGTCTTGCG 6186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410750093559206