Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq7817 100 2e-16 >seq7817 Length=11892 Score = 100 bits (110), Expect = 2e-16 Identities = 406/633 (64%), Gaps = 19/633 (3%) Strand=Plus/Minus Query 97007 TTGGGAAA-GGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACA 97065 |||||||| ||||| || || | | | |||||| |||| | || | ||| ||| | Sbjct 4493 TTGGGAAATGGCCTCGGCTCTCTCTTCAACTGCTCCTTGAGGGGCTCGACGTGGTTCTTA 4434 Query 97066 TAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGG 97125 || | || || || | ||||| | |||||||||| | | || || || Sbjct 4433 TAGACATGGTAGTCACCGAGGGTGTGCACGAATTCTCCAGCCTTGAGACCACAAACTTGA 4374 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATA 97185 || || | | ||| || | |||||| ||||||||| || || ||||| || |||||| Sbjct 4373 GCAATGAGCCGAGTCAACAAAGAATACGAAGCAATGTTGAAGGGGACCCCAAGGCCCATA 4314 Query 97186 TCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTC 97245 ||| || | ||| || | | || || | | ||||| | ||| | ||||| | Sbjct 4313 TCACAGGACCGTTGGTACATCAAGCACGACAATTCTCCATTCGAAACAAAGAACTGGCAA 4254 Query 97246 AATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA--TTCCAAGCACACA 97303 || | ||||| ||||| | ||||||| ||| | || ||| ||||| ||| ||| Sbjct 4253 AACATGTGACATGGGGGAAGTGCCATTTCTGGGA--TCGCCGACGGGTTCCACGCAGACA 4196 Query 97304 TCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGAT 97363 | | || | || ||| || ||||| | | || | | |||| ||| | || | Sbjct 4195 TGATGATACGTCGATCTGTCGGGTTGTTCTTGATCTTTTCGATTACTTGCGCCAGCTGGT 4136 Query 97364 CAACGCCTTCTCCACCATAATTG---TGCTTAAGACCTTGATATTCTGCTCCAAAATGCC 97420 | ||||||| |||| || | | ||| || | || || | ||| ||||| || | Sbjct 4135 CCACGCCTTGTCCAGTGTAGTCGGCATGCATATCAG--TG-TACTTTGCCCCAAAGTGGC 4079 Query 97421 TCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCT 97480 ||| || |||||||| | || || ||||| || | || | || | ||||| || Sbjct 4078 GCCACTGAAATCCATAGATCGGGCCCAGGTCCCCAACCTCACGATGATTCAAACCGGACT 4019 Query 97481 TATCTAAATAGGACCTAG----ATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCA 97536 |||| | ||| || | | ||||| ||||||||||| | || || | | | Sbjct 4018 TATCGA----GGAACTCGCGCGACCCATTGGCATCCCAAATTCGAACCCCCTTTTCCGTC 3963 Query 97537 AGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTC 97596 ||| |||| || || | || ||||||||| | || ||| || ||| |||||| Sbjct 3962 AGCGTGTTGCCGTTGGTGGCCCCAGCGATAAACCAGAGCAGTTCCTCAGCAAGCCCTCTC 3903 Query 97597 CAAAATACTCTCTTAGTTGTTAAGAGAGGaaaa 97629 ||||| || | ||| || || | ||| || ||| Sbjct 3902 CAAAAGACACGCTTCGTGGTGAGGAGGGGGAAA 3870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346744571634530