Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2450 100 4e-16 seq2282 95.1 2e-14 >seq2450 Length=27238 Score = 100 bits (110), Expect = 4e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 124617 AAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCA 124676 ||||||||||| ||||| || |||||||| || ||||| |||||| | | || || || Sbjct 7518 AAACAGAAAATCCAAGACAAGGAAGGTATCCCCCCTGACCAACAACGATTGATCTTCGCC 7577 Query 124677 GGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 ||||| || | |||||| |||| || | ||||| || || ||||| ||||| ||| Sbjct 7578 GGAAAGCAGCTCGAGGATGGTCGCACCCTTTCCGATTACAACATCCAAAAGGAATCTACT 7637 Query 124737 TTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | || ||||| | ||| | || |||||||| ||| || Sbjct 7638 CTCCACTTGGTCCTCCGTCTTCGTGGTGGTATGCAAATTT 7677 Score = 86.0 bits (94), Expect = 9e-12 Identities = 121/169 (72%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 124617 AAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCA 124676 || || ||||||||||| || |||||||| || ||||| |||||| | | || || || Sbjct 7290 AAGCAAAAAATTCAAGACAAGGAAGGTATTCCCCCTGACCAACAACGATTGATCTTCGCT 7349 Query 124677 GGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 || || || | ||||| |||| || | ||||| || || || || ||||| ||| Sbjct 7350 GGCAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACAACATCCAGAAGGAATCTACT 7409 Query 124737 TTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTCATAAAAA 124784 | || ||||| | ||| | || |||||||| ||| ||| |||||| Sbjct 7410 CTCCACTTGGTCCTCCGTCTTCGTGGTGGTATGCAAATTTTCGTAAAAA 7458 >seq2282 Length=5406 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 124617 AAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCA 124676 ||||||||||| ||||| || |||||||| || ||||| |||||| | | || || || Sbjct 315 AAACAGAAAATCCAAGACAAGGAAGGTATCCCCCCTGACCAACAACGATTGATCTTCGCT 256 Query 124677 GGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 || || || | |||||| |||| || | ||||| || || ||||| ||||| ||| Sbjct 255 GGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACAACATCCAAAAGGAATCTACT 196 Query 124737 TTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| || || | || |||||||| Sbjct 195 CTCCACTTGGTCTTGCGCCTTCGTGGTGGTAT 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755367904387200