Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2450 98.7 1e-15 seq2282 93.3 5e-14 seq5736 89.7 6e-13 seq1860 87.8 2e-12 seq1292 86.0 7e-12 >seq2450 Length=27238 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||||||||| | | ||||| ||||| || | || ||||| || || |||||| Sbjct 9584 TATTGTCCTCCACGAAGGCGCAAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAA 9525 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || | ||||| || |||| || |||||||| |||||||| || | ||| || ||||| Sbjct 9524 TCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCA 9465 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTT--GAGCGTCGCCACCGTGTCGCTCG 43128 | || | | |||||||| |||||| || || ||| | | | || ||| | Sbjct 9464 GGGGGGATACCTTCCTTGTCTTGGATTTTCTGCTTCACAGCTTGG--ATGGTATCGGAGG 9407 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || |||| ||||| || || || || ||||| || || ||||| ||||| Sbjct 9406 ACTCGACTTCGAGAGTGATAGTCTTACCGGTGAGCGTTTTGACGAAGATCTGCAT 9352 >seq2282 Length=5406 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| ||||| || | || |||||||| || |||||||| | ||||| || | Sbjct 179 CGCAAGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCA 238 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| |||||||| || | ||| || ||||| | || | | |||||| Sbjct 239 TCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTG 298 Query 43089 TCCATGATTTTTTGTTTGA--GCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || |||||| ||||| | || | | | |||||| || || || || | || | Sbjct 299 TCTTGGATTTTCTGTTTCACGGCTTGG--ATGGTGTCGGAGGACTCGACCTCAAGGGTAA 356 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || ||||| | || ||||||||||| ||||| Sbjct 357 TTGTCTTTCCCGTCAAAGTTTTTACAAAGATCTGCAT 393 >seq5736 Length=2708 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| ||||| || | || |||||| || || |||||||| | ||||| || | Sbjct 2448 CGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCA 2389 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || | ||| || ||||| | || | | |||||| Sbjct 2388 TCCTCGAGCTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGAATACCTTCCTTG 2329 Query 43089 TCCATGATTTTTTGTTTGA--GCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || |||||| || || | || | | | |||||| || || || |||| |||| Sbjct 2328 TCTTGGATTTTCTGCTTCACGGCTTGG--ATGGTGTCGGAGGACTCGACTTCGAGAGTGA 2271 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || || || || || ||||||||||| Sbjct 2270 TAGTCTTTCCTGTGAGGGTTTTGACGAAGATTTGCAT 2234 >seq1860 Length=4765 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || |||||||| | ||||| || | || || |||||||| |||||||| Sbjct 2451 TCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAG 2510 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGA--GCG 43110 || | ||| || ||||| | || | || |||||||| |||||| || || | || Sbjct 2511 ATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACAGCT 2570 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| || || || || | || ||||| || ||||| | || || | Sbjct 2571 TGG--ATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTTCCCGTCAAAGTTTTCA 2628 Query 43171 CAAAGATTTGCATTTT 43186 | ||||||||||| || Sbjct 2629 CGAAGATTTGCATGTT 2644 >seq1292 Length=4421 Score = 86.0 bits (94), Expect = 7e-12 Identities = 161/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||||||||| | | ||||| ||||| || | || ||||| || || |||||| Sbjct 289 TATTGTCCTCCACGAAGGCGCAAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAA 230 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || | ||||| || |||| || | ||||| || ||||| || | ||| || ||||| Sbjct 229 TCGGAAAGAGTGCGACCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCA 170 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGA--GCGTCGCCACCGTGTCGCTCG 43128 | || | || ||||||||| |||||| || || | || | | | ||||| | Sbjct 169 GGGGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGGCTTGG--ATGGTGTCAGAAG 112 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || | || || || || ||||| | || ||||| ||||| ||||| Sbjct 111 ACTCGACCTCAAGGGTAATTGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 57 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571750918920120