Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq6235 113 3e-20 seq2450 105 4e-18 seq7632 98.7 6e-16 seq1860 98.7 6e-16 seq1292 93.3 3e-14 seq5736 82.4 5e-11 >seq6235 Length=3334 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || |||| ||| | |||| ||| || || |||||||| ||||| Sbjct 1202 CCACCACGAAGGCGCAAGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAA 1143 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||||||||| ||||| ||||| || || ||||| ||| Sbjct 1142 AGGGTGCGCCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCAGGGGGG 1083 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||||||||| | | | || | |||| |||||||| Sbjct 1082 ATACCTTCCTTGTCTTGAATCTTTTGCTTCACAGCTTGGATGGTGTCGGAGGATTCGACT 1023 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || |||||||| || || |||||||||||||| Sbjct 1022 TCGAGAGTGATAGTCTTACCGGTGAGGGTCTTGACAAAGATCTGCAT 976 Score = 102 bits (112), Expect = 5e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || |||| ||| | |||| ||| ||||| |||||||| || || Sbjct 974 CCACCACGAAGGCGCAAGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCAGAA 915 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGG 34280 || || |||| || | |||||| || ||||| || | || || ||||| || || Sbjct 914 AGGGTGCGACCGTCCTCGAGCTGCTTCCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGG 855 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 || || |||||||| ||||||||||| | | | || | |||| || |||| Sbjct 854 ATAC-CT-TCCTTGTCTTGGATCTTTTGCTTCACAGCTTGGATGGTGTCGGAAGACTCGA 797 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | |||||||| ||||| || || ||||| |||||||||||||| Sbjct 796 CCTCGAGAGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 748 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | |||| ||| ||||| |||||||| ||||| || || |||| Sbjct 1415 AGGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCC 1356 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| || | || || ||||| ||| | | |||||||| Sbjct 1355 TCAAGCTGCTTTCCCGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCT 1296 Query 34298 GCTATCTTTTGCTTTAGATCGGCT---ATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 ||||||||||| | ||||| || | |||| || ||||| || | || || Sbjct 1295 TGGATCTTTTGCTTCA---CGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATC 1239 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || | |||||| || ||||||||||| Sbjct 1238 GTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 1204 >seq2450 Length=27238 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||| ||| | |||| ||| ||||| |||||||| ||||| Sbjct 9579 TCCTCCACGAAGGCGCAAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGA 9520 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| || | ||||||||| ||||| || | || || ||||| ||| Sbjct 9519 AAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGG 9460 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| || || ||||| | | | || | ||||| || ||||| Sbjct 9459 GATACCTTCCTTGTCTTGGATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGAC 9400 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || |||||||| ||||| || ||||||||||| Sbjct 9399 TTCGAGAGTGATAGTCTTACCGGTGAGCGTTTTGACGAAGATCTGCAT 9352 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || |||| ||| | |||| || ||||| |||||||| ||||| Sbjct 9122 CCACCACGAAGGCGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAA 9063 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||||||||| ||||| || | || || ||||| ||| Sbjct 9062 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGA 9003 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT---ATCGAATCGGTCGATTCG 34339 | | |||||||| || |||||||| | ||||| || | |||| || ||| Sbjct 9002 ATACCTTCCTTGTCTTGAATTTTTTGCTTGA---CGGCTTGGATGGTGTCGGAGGACTCG 8946 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | || || || || || || | ||||||||| ||||||||||| Sbjct 8945 ACCTCAAGGGTAATTGTCTTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 8896 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || |||| ||| | |||| || ||||| |||||||| ||||| Sbjct 9350 CCACCACGAAGGCGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAA 9291 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||||||||| ||||| || | || || ||||| ||| Sbjct 9290 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGG 9231 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT---ATCGAATCGGTCGATTCG 34339 | | |||||||| ||||| || || | ||||| || | ||||| || || Sbjct 9230 ATACCTTCCTTGTCTTGAATCTTCTGTTTCA---CGGCTTGGATGGTATCGGAGGACTCA 9174 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | ||||| || || |||||||| || || || ||||||||||| Sbjct 9173 ACTTCGAGAGTGATAGTCTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 9124 >seq7632 Length=1044 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||| ||| | |||| ||| ||||| |||||||| ||||| Sbjct 671 TCCTCCACGAAGGCGCAAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGA 730 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| ||||| ||||| || ||||| || | || || ||||| ||| Sbjct 731 AAGAGTGCGACCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGG 790 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT---ATCGAATCGGTCGATTC 34338 | || ||||||||| || || ||||| | ||||| || | || | || || Sbjct 791 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCA---CGGCTTGGATAGTGTCAGAAGACTC 847 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || | || || || || || || | ||||||||| ||||||||||| Sbjct 848 GACCTCAAGGGTAATTGTCTTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 898 >seq1860 Length=4765 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || || | ||| | |||| ||| ||||| |||||||| ||||| Sbjct 1959 CCACCACGAAGGCGCAAGACTAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAA 2018 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| |||| ||||| ||||| || ||||| || | || || ||||| | ||| Sbjct 2019 AGGGTCCGGCCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGG 2078 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||||||||| | | | || | |||| || ||||| Sbjct 2079 ATCCCT-TCCTTGTCTTGAATCTTTTGCTTCACAGCTTGGATGGTGTCGGAGGACTCGAC 2137 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || || || || | ||||||||| ||||||||||| Sbjct 2138 CTCAAGGGTAATAGTCTTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 2185 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | |||| ||| || || |||||||| ||||| || || | || Sbjct 1746 AGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCC 1805 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || | || || ||||| ||| | || |||||||| Sbjct 1806 TCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCT 1865 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || || ||||| | | | || | ||||| || ||||| || | || ||||| Sbjct 1866 TGGATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTC 1925 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | ||||||||| ||||||||||| Sbjct 1926 TTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 1957 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | |||| ||| || || |||||||| ||||| || || | || Sbjct 2202 AGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCC 2261 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || | || || ||||| ||| | || |||||||| Sbjct 2262 TCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCT 2321 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || || ||||| | | | || | ||||| || ||||| || | || ||||| Sbjct 2322 TGGATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTC 2381 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | ||||||||| ||||||||||| Sbjct 2382 TTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 2413 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || |||| ||| | |||| ||| || || |||||||| ||||| Sbjct 1503 CCACCACGAAGGCGCAAGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAA 1562 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||||||||| ||||| || | || || ||||| ||| Sbjct 1563 AGAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGG 1622 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| || || ||||| | | | || | ||||| || ||||| Sbjct 1623 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACC 1682 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || || || || | ||||||||| ||||||||||| Sbjct 1683 TCAAGGGTAATAGTCTTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 1729 >seq1292 Length=4421 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||| ||| | |||| ||| ||||| |||||||| ||||| Sbjct 284 TCCTCCACGAAGGCGCAAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGA 225 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| ||||| ||||| || ||||| || | || || ||||| ||| Sbjct 224 AAGAGTGCGACCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGG 165 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT---ATCGAATCGGTCGATTC 34338 | || ||||||||| || || ||||| | ||||| || | || | || || Sbjct 164 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCA---CGGCTTGGATGGTGTCAGAAGACTC 108 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || | || || || || || || | |||||| || ||||||||||| Sbjct 107 GACCTCAAGGGTAATTGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 57 >seq5736 Length=2708 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || |||| ||| | |||| || ||||| |||||||| ||||| Sbjct 2688 CCACCACGAAGGCGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAA 2629 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | |||||| || ||||| || | || || ||||| ||| Sbjct 2628 AGAGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGG 2569 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT---ATCGAATCGGTCGATTCG 34339 | | |||||||| || || ||||| | ||||| || | ||||| || || Sbjct 2568 ATACCTTCCTTGTCTTGGATTTTCTGCTTCA---CGGCTTGGATGGTATCGGAGGACTCA 2512 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | ||||| || || |||||||| || || || ||||||||||| Sbjct 2511 ACTTCGAGAGTGATAGTCTTCCCGGTGAGGGTCTTGACGAAGATCTGCAT 2462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323035267622240