Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq7632 134 1e-26 seq2450 134 1e-26 seq1292 134 1e-26 seq6235 125 6e-24 seq1860 125 6e-24 seq5736 109 4e-19 seq1856 105 5e-18 seq219 89.7 4e-13 seq8353 84.2 2e-11 >seq7632 Length=1044 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || |||||||| |||||||| ||| || |||| |||| Sbjct 687 AAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCT 746 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| ||||||||||| ||||| || |||||||| || || | ||||||||||| Sbjct 747 TCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCCTCCTTGTCT 806 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||||| || || | |||| | ||| ||||| | |||||| ||| Sbjct 807 TGGATTTTCTGCTTCACGGCTTGGATAGTGTCAGAAGACTCGACCTCAAGGGTAATTGTC 866 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||| ||| ||||| ||||| ||||| Sbjct 867 TTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 898 >seq2450 Length=27238 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||| |||||||| ||| || |||| |||| Sbjct 9107 AAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCC 9048 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || ||||| ||||| || |||||||| || || | ||| |||||||| Sbjct 9047 TCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGAATACCTTCCTTGTCT 8988 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||||||||| || || | | |||| ||| ||||| | |||||| ||| Sbjct 8987 TGAATTTTTTGCTTGACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATTGTC 8928 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||| ||| ||||| ||||| ||||| Sbjct 8927 TTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 8896 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||| |||||||| ||| || |||| |||| || Sbjct 7420 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCG 7361 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||| || |||||||| || || | ||| |||||||| | Sbjct 7360 AGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGAATACCTTCCTTGTCTTGA 7301 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||||||||| || || | | |||| | ||| ||||||| |||||| ||||| Sbjct 7300 ATTTTTTGCTTGACGGCTTGGATGGTGTCAGAAGACTCGACCTCCAGGGTAATTGTCTTT 7241 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| ||| || || || || |||||| Sbjct 7240 CCCGTCAAAGTTTTTACGAAAATCTGCATG 7211 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||| || |||||||| ||| || |||| | || || Sbjct 7648 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGACCATCCTCG 7589 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| ||||| || |||||||| || || | ||| |||||||| Sbjct 7588 AGCTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGG 7529 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || || || | | |||| ||| ||||| | |||||| ||||| Sbjct 7528 ATTTTCTGTTTCACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATAGTCTTT 7469 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| ||| || || || |||||||| Sbjct 7468 CCCGTCAAAGTTTTTACGAAAATTTGCAT 7440 >seq1292 Length=4421 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || |||||||| |||||||| ||| || |||| |||| Sbjct 268 AAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCT 209 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| ||||||||||| ||||| || |||||||| || || | ||||||||||| Sbjct 208 TCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCCTCCTTGTCT 149 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||||| || || | | |||| | ||| ||||| | |||||| ||| Sbjct 148 TGGATTTTCTGCTTCACGGCTTGGATGGTGTCAGAAGACTCGACCTCAAGGGTAATTGTC 89 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||| ||| || || ||||| ||||| Sbjct 88 TTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 57 >seq6235 Length=3334 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||| |||||||| ||| || |||| |||| || Sbjct 1412 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCA 1353 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| ||||| || |||||||| || || | ||| |||||||| Sbjct 1352 AGCTGCTTTCCCGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGG 1293 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || || | | |||| ||| ||||| | |||||||||||| Sbjct 1292 ATCTTTTGCTTCACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATCGTCTTT 1233 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| ||| || || ||||| ||||| Sbjct 1232 CCCGTCAAAGTTTTTACGAAGATCTGCAT 1204 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 45175 GCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACC 45234 |||| | || || || || || || ||||| ||||| || |||||||| ||||| | || Sbjct 1593 GCGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGAGGGATTCC 1534 Query 45235 CTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCAC 45294 |||||||| ||| |||||||| || || | | | || ||| || || | Sbjct 1533 TTCCTTGTCTTGAATCTTTTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACTTCGAG 1474 Query 45295 GGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||||||| ||||||| ||| ||||| || |||||||| Sbjct 1473 AGTAATCGTCTTTCCCGTCAAAGTTTTCACGAAAATTTGCAT 1432 >seq1860 Length=4765 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || || ||||| || || |||||||| |||||||| ||| || || |||| Sbjct 1974 AAGACTAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGGGTCCGGCCGTCT 2033 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| ||||||||||| ||||| || |||||||| ||||| | || |||||||| Sbjct 2034 TCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATCCCTTCCTTGTCT 2093 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| |||||||| || || | | |||| ||| ||||| | |||||| ||| Sbjct 2094 TGAATCTTTTGCTTCACAGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATAGTC 2153 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||| ||| ||||| ||||| ||||| Sbjct 2154 TTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 2185 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||| || |||||||| ||| || |||| | || || Sbjct 2433 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCG 2492 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||| || |||||||| || || | || |||||||| Sbjct 2493 AGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGG 2552 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || || | | | || ||| ||||| | |||||| ||||| Sbjct 2553 ATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTT 2612 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||||| ||| ||||| ||||||||||||||| Sbjct 2613 CCCGTCAAAGTTTTCACGAAGATTTGCATGTTG 2645 >seq5736 Length=2708 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||| |||||||| ||| || |||| | || Sbjct 2445 AAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCC 2386 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||||||||| ||||| || |||||||| || || | ||| |||||||| Sbjct 2385 TCGAGCTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGAATACCTTCCTTGTCT 2326 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||||| || || | | |||| ||| || || | || || ||| Sbjct 2325 TGGATTTTCTGCTTCACGGCTTGGATGGTGTCGGAGGACTCGACTTCGAGAGTGATAGTC 2266 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || || || || |||||||||||| Sbjct 2265 TTTCCTGTGAGGGTTTTGACGAAGATTTGCATG 2233 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||| |||||||| ||| || |||| | || Sbjct 2673 AAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCC 2614 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||||||||| ||||| || |||||||| || || | ||| |||||||| Sbjct 2613 TCGAGCTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCT 2554 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||||| || || | | | || ||| || || | || || ||| Sbjct 2553 TGGATTTTCTGCTTCACGGCTTGGATGGTATCGGAGGACTCAACTTCGAGAGTGATAGTC 2494 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| || ||||| ||||| Sbjct 2493 TTCCCGGTGAGGGTCTTGACGAAGATCTGCAT 2462 >seq1856 Length=6291 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || |||||||| |||||||| ||| || ||| |||| Sbjct 6183 AAGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCT 6124 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| ||||||||||| || | || ||||||||||| || | ||| |||||||| Sbjct 6123 TCCAATTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATACCTTCCTTGTCT 6064 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||||| || || | | | || | ||| || || | || || ||| Sbjct 6063 TGGATTTTCTGCTTCACAGCTTGGATGGTATCGGAAGACTCGACTTCGAGAGTGATAGTC 6004 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || || || || |||||||||||| Sbjct 6003 TTACCGGTGAGGGTTTTGACGAAGATTTGCATG 5971 >seq219 Length=11685 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45208 CAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGC 45267 ||| ||||||||||| || || | ||||||||||||| || |||||||| || || Sbjct 7953 CAATCGCTGTTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTTTGCTTGACAGCTTG 8012 Query 45268 CACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAA 45327 | | |||| | ||||||||| | ||| || ||||| || || || |||||||| || Sbjct 8013 GATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGTAAGGGTCTTCACGAA 8072 Query 45328 GATTTGCAT 45336 ||| ||||| Sbjct 8073 GATCTGCAT 8081 >seq8353 Length=20620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 45232 ACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTC 45291 ||| ||||| ||| ||||||||||| || ||| | | ||||| | ||||||||| Sbjct 4163 ACCTTCCTTATCCTGGATTTTTTGCTTGACGGCCTGGATGGTGTCCGAAGACTCCACCTC 4104 Query 45292 CACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||| || ||||| ||||||| |||||| || |||||||||||| Sbjct 4103 GAGGGTGATAGTCTTCCCCGTCAAAGTCTTGACGAAGATTTGCATG 4058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395030281060909