Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq7632 89.7 4e-13 seq1292 89.7 4e-13 seq2450 86.0 5e-12 >seq7632 Length=1044 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 18092 TTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTA 18151 || || |||||| || || | | |||| |||||| || ||||| || || |||||||| Sbjct 665 TTATTGTCCTCCACGAAGGCGCAAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTA 724 Query 18152 GTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 |||| | || || ||||||||||| || || || |||| | || |||||| || Sbjct 725 ATCGGAAAGAGTGCGACCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTC 784 Query 18212 CACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGG 18271 ||| | ||| ||||| || |||| ||||| || | | ||||||| | Sbjct 785 AGGGGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGGCTTGGATAGTGTCAGAAGA 844 Query 18272 CTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||| ||| || | || || ||||| ||||| || || || ||||| Sbjct 845 CTCGACCTCAAGGGTAATTGTCTTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 898 >seq1292 Length=4421 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 18092 TTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTA 18151 || || |||||| || || | | |||| |||||| || ||||| || || |||||||| Sbjct 290 TTATTGTCCTCCACGAAGGCGCAAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTA 231 Query 18152 GTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 |||| | || || ||||||||||| || || || |||| | || |||||| || Sbjct 230 ATCGGAAAGAGTGCGACCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTC 171 Query 18212 CACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGG 18271 ||| | ||| ||||| || |||| ||||| || | | |||||| | Sbjct 170 AGGGGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGGCTTGGATGGTGTCAGAAGA 111 Query 18272 CTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||| ||| || | || || ||||| |||||||| || || ||||| Sbjct 110 CTCGACCTCAAGGGTAATTGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 57 >seq2450 Length=27238 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | || |||| ||| || || ||||| ||||| |||||||| |||| Sbjct 7894 CCTCCACGAAGACGGAGGACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAATCGGAA 7835 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || || || | || ||||| || |||| | || |||||| || || Sbjct 7834 AGAGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGG 7775 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || ||| | ||||||||| | | |||||| | |||| Sbjct 7774 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACGGCTTGGATGGTGTCAGAAGACTCGACC 7715 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||| || | || || ||||| ||||| || ||||||||||| Sbjct 7714 TCAAGGGTAATAGTCTTTCCCGTCAAAGTTTTCACGAAAATTTGCAT 7668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379300869654105