Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7817 95.1 2e-14 >seq7817 Length=11892 Score = 95.1 bits (104), Expect = 2e-14 Identities = 438/681 (64%), Gaps = 22/681 (3%) Strand=Plus/Plus Query 35149 GGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCT 35208 ||| ||| | || ||||| || || | ||| ||||| |||| ||| | ||| ||| Sbjct 3798 GGAAGATCGCACCGGAACGGGGACCATCGCCAAGTTTGGGACCCAGATGCGCTTCAGTCT 3857 Query 35209 TCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGA 35268 || || |||| | | || | ||||| || ||| | || |||||||| ||| || Sbjct 3858 GCGGGATGACATTTTCCCCCTCCTCACCACGAAGCGTGTCTTTTGGAGAGGGCTTGCTGA 3917 Query 35269 AGAACT-CTCGTGGTTCATCA--GGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAA 35325 ||||| ||| ||||| ||| ||||| | || ||| ||| || | | ||| Sbjct 3918 GGAACTGCTC-TGGTTTATCGCTGGGGCCAC-CA-ACGGCAACACGCTGACGGAAAAGGG 3974 Query 35326 GATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGA 35385 | | | || ||| | || ||||||||||| || || | || | || || | | Sbjct 3975 GGTTCGAATTTGGGATGCCAATGGGTCGCGCGAGTTCCTCGATAAGTCCGGTTTGAATCA 4034 Query 35386 TAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGA 35445 | | | | || || |||| || | || ||||| || ||||| || ||||| || | Sbjct 4035 TCGTGAGGTTGGGGACCTGGGCCCGATCTATGGATTTCAGTGGCGCCACTTTGGGGCAAA 4094 Query 35446 ATA---TGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATAT 35502 || ||||| || | |||| || |||||| | || | || || |||| | | Sbjct 4095 GTACACTGATA--TGCA-TGCCGACTACACTGGACAAGGCGTGGACCAGCTGGCGCAAGT 4151 Query 35503 ACT---AAAGACCCTGAGAGAAAATCCAGAT-GATAGAAGGATGATTATGACGGCATGGA 35558 | | ||||| | |||| | || || ||| || | || || ||| | || |||| Sbjct 4152 AATCGAAAAGATCA----AGAACAACCCGACAGATCGACGTATCATCATGTCTGCGTGGA 4207 Query 35559 ATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATG 35618 | || || | | ||||| ||||| ||||| |||||| | || || | || Sbjct 4208 ACCCGTCGGCGATCCCAGAAATGGCACTTCCCCCATGTCACATGTTTTGCCAGTTCTTTG 4267 Query 35619 TGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCG 35678 | | |||||||||||||||||| | |||| || || | | ||| | || | || | Sbjct 4268 TTTCGAATGGAGAATTGTCGTGCTTGATGTACCAACGGTCCTGTGATATGGGCCTTGGGG 4327 Query 35679 TGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGC-CAGTATGGTGGGT 35737 | |||||||| ||||| || || ||| | |||||| || || || || | || ||| Sbjct 4328 TCCCCTTCAACATTGCTTCGTATTCTTTGTTGACTCGGCTCATTGCTCAAGTTTGT-GGT 4386 Query 35738 CTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATT 35797 || || | ||||| || | | ||| || |||||| || | ||||| | |||| | Sbjct 4387 CTCAAGGCTGGAGAATTCGTGCACACCCTCGGTGACTACCATGTCTATAAGAACCACGTC 4446 Query 35798 GAGGTGTTAAAGAAGCAGTTG 35818 ||| | ||| |||||||| Sbjct 4447 GAGCCCCTCAAGGAGCAGTTG 4467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989465717189195