Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq7817 113 4e-20 >seq7817 Length=11892 Score = 113 bits (124), Expect = 4e-20 Identities = 273/411 (66%), Gaps = 2/411 (0%) Strand=Plus/Minus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 ||||| || |||||||| || || || ||| |||||| | ||||||||| || ||||| Sbjct 4454 AGGGGCTCGACGTGGTTCTTATAGACATGGTAGTCACCGAGGGTGTGCACGAATTCTCCA 4395 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 | | || || || ||||| || || |||| | | || || ||||| Sbjct 4394 GCCTTGAGACCACAAACTTGAGCAATGAGCCGAGTCAACAAAGAATACGAAGCAATGTTG 4335 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 || |||||||| |||||||| || ||||| ||||||| | ||| |||| || || Sbjct 4334 AAGGGGACCCCAAGGCCCATATCACAGGACCGTTGGTACATCAAGCACGACAATTCTCCA 4275 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164 | || | ||||| || || | |||||| || || || ||||| | || || Sbjct 4274 TTCGAAACAAAGAACTGGCAAAACATGTGACATGGGGGAAGTGCCATTTCTGGGATCGCC 4215 Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATC-GTGGGGCCGCCTGTTAATTAGATC 21223 | ||||||||||| |||| | ||| || ||||| || ||| | | || || || Sbjct 4214 GACGGGTTCCACGCAGACATGATGATACGTCGATCTGTCGGGTTG-TTCTTGATCTTTTC 4156 Query 21224 CACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTA 21283 | || | |||||||||||| || || || ||||| ||| | | |||| Sbjct 4155 GATTACTTGCGCCAGCTGGTCCACGCCTTGTCCAGTGTAGTCGGCATGCATATCAGTGTA 4096 Query 21284 CTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 || |||||||| || | |||||| || || || | ||| ||||| || || Sbjct 4095 CTTTGCCCCAAAGTGGCGCCACTGAAATCCATAGATCGGGCCCAGGTCCCC 4045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427727363071920