Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2450 123 2e-23 seq6235 114 1e-20 seq1292 105 7e-18 seq1516 91.5 1e-13 seq2282 89.7 5e-13 >seq2450 Length=27238 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | ||||| || ||||| ||||| |||||| Sbjct 7666 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAA 7607 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || |||||||| || || || |||||| ||||| || || || || Sbjct 7606 AGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGG 7547 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| |||||| ||||| | || | ||||||| || ||| ||| Sbjct 7546 ATACCTTCCTTGTCTTGGATTTTCTGTTTCACGGCTTGGATGGTGTCGGAGGACTCGACC 7487 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | ||||| || ||||| ||||||||||| ||||||||| Sbjct 7486 TCAAGGGTAATAGTCTTTCCCGTCAAAGTTTTTACGAAAATTTGCATA 7439 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | ||||| || || || ||||| |||||| Sbjct 7438 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAA 7379 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| |||||||| || ||||| |||||| ||||| || || || || Sbjct 7378 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGA 7319 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| |||||||| || | || | ||||| | | ||| ||| Sbjct 7318 ATACCTTCCTTGTCTTGAATTTTTTGCTTGACGGCTTGGATGGTGTCAGAAGACTCGACC 7259 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || ||||| ||||||||||| || ||||| Sbjct 7258 TCCAGGGTAATTGTCTTTCCCGTCAAAGTTTTTACGAAAATCTGCAT 7212 >seq6235 Length=3334 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | ||||| || || || ||||| |||||| Sbjct 1430 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAA 1371 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || ||||| || || || |||||| ||||| || || || || Sbjct 1370 AGAGTGCGACCGTCCTCAAGCTGCTTTCCCGCGAAGATCAATCGTTGTTGGTCAGGGGGG 1311 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| ||||| || | || | ||||||| || ||| ||| Sbjct 1310 ATACCTTCCTTGTCTTGGATCTTTTGCTTCACGGCTTGGATGGTGTCGGAGGACTCGACC 1251 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | |||||| || ||||| ||||||||||| || |||||| Sbjct 1250 TCAAGGGTAATCGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCATA 1203 >seq1292 Length=4421 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || ||||||| ||||| || || || ||||| |||||| | |||| | Sbjct 271 CGCAAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCG 212 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | || || || || |||||| ||||| || || || || ||||| || ||| Sbjct 211 TCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCCTCCTTG 152 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| || || | || | ||||| | | ||| ||||||| ||| | Sbjct 151 TCTTGGATTTTCTGCTTCACGGCTTGGATGGTGTCAGAAGACTCGACCTCAAGGGTAATT 92 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || ||||| ||||||||||| || |||||| Sbjct 91 GTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCATA 56 >seq1516 Length=4393 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 139632 AGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCT 139691 |||||| ||||| || || || || || ||||| ||||| |||||| ||||| | Sbjct 2420 AGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATTTTCTGTTTCACGG 2361 Query 139692 GTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 || | ||||||| || ||| ||||||| ||| | ||||| || ||||| ||||||| Sbjct 2360 CTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTGATTGTCTTTCCCGTCAAAGTTTTTA 2301 Query 139752 CGAATATTTGCAT 139764 |||| |||||||| Sbjct 2300 CGAAGATTTGCAT 2288 >seq2282 Length=5406 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| |||||||| || || || |||||| ||||| || || || || || ||||| || Sbjct 10 GTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTT 69 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| |||||| ||||| | || | ||||||| | ||| || || | || | Sbjct 70 GTCTTGGATTTTCTGTTTCACAGCTTGGATGGTGTCGGAAGACTCGACTTCGAGAGTGAT 129 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||| || ||||| ||||||||||| || |||||| Sbjct 130 CGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCATA 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496006152736800