Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2450 98.7 8e-16 >seq2450 Length=27238 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| |||| ||| |||||| || | ||||||||||| Sbjct 8894 CCACCACGAAGGCGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAA 8835 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | || |||||||| || |||||||| ||||| || | || Sbjct 8834 AGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGG 8775 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| || ||| || | |||||| || |||||| Sbjct 8774 ATACCTTCCTTGTCTTGAATCTTCTGTTTCACGGCTTGGATGGTGTCGGAAGACTCGACT 8715 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| || || || || ||||||||||| Sbjct 8714 TCGAGAGTGATAGTCTTCCCGGTGAGGGTCTTGACGAAAATTTGCAT 8668 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| |||| ||| |||||||| | ||||||||||| Sbjct 7666 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAA 7607 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | || || ||||| || |||||||| ||||| || | || Sbjct 7606 AGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGG 7547 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| || ||| || | |||||| | |||||| Sbjct 7546 ATACCTTCCTTGTCTTGGATTTTCTGTTTCACGGCTTGGATGGTGTCGGAGGACTCGACC 7487 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| ||||| || | |||||| || ||||||||||| Sbjct 7486 TCAAGGGTAATAGTCTTTCCCGTCAAAGTTTTTACGAAAATTTGCAT 7440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381326239349082