Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7817 118 2e-21 >seq7817 Length=11892 Score = 118 bits (130), Expect = 2e-21 Identities = 231/336 (69%), Gaps = 4/336 (1%) Strand=Plus/Plus Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 |||||| ||| || |||||| | | ||| | |||| | ||||| || | | | | Sbjct 4163 TCAAGAACAACCCGACAGATCGACGTATCATCATGTCTGCGTGGAACCCGTCGGCGATCC 4222 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGA-TGGCAA 70302 |||||||||| || || |||||| ||||| || ||||| | | | ||| ||| | Sbjct 4223 CAGAAATGGCACTTCCCCCATGTCACATGTTTTGC-CAGTTCTT-TGTTTCGAATGGAGA 4280 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 |||||| ||||| ||||| || || || |||||||| || || ||||| ||||| Sbjct 4281 ATTGTCGTGCTTGATGTACCAACGGTCCTGTGATATGGGCCTTGGGGTCCCCTTCAACAT 4340 Query 70363 TGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGA 70422 ||| |||||| ||||||| | | |||||||| || || || || || || Sbjct 4341 TGCTTCGTATTCTTTGTTGACTCGGCTCATTGCTCAAGTTTGTGGTCTCAAGGCTGGAGA 4400 Query 70423 GTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGT 70482 ||||| |||||| | || ||| || || ||| || ||| ||||||| | |||| Sbjct 4401 ATTCGTGCACACCCTCGGTGACTACCATGTCTATAAGAACCACGTCGAGCCCCTCAAGGA 4460 Query 70483 GCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCT 70518 ||| | | | |||||||| || ||||||||||| Sbjct 4461 GCAGTTGAAGAGAGAGCCGAGGCCATTTCCCAAGCT 4496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740972783234040