Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1860 104 2e-17 seq2450 102 6e-17 seq1292 96.9 3e-15 seq1856 95.1 9e-15 seq2282 93.3 3e-14 seq7632 87.8 1e-12 seq6235 86.0 5e-12 >seq1860 Length=4765 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || || ||||| |||||||||||| ||| | | | || || Sbjct 2433 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCG 2492 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | ||||| ||||||||||| || || ||||| ||||| Sbjct 2493 AGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGG 2552 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| || ||||||||| || || || | ||||||||| || Sbjct 2553 ATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTT 2612 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || |||| |||||| || || |||||||| || Sbjct 2613 CCCGTCAAAGTTTTCACGAAGATTTGCATGTT 2644 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || || ||||| |||||||||||| ||| | | | || || Sbjct 1749 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCG 1808 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | ||||| ||||||||||| || || ||||| ||||| Sbjct 1809 AGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGG 1868 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| || ||||||||| || || || | ||||||||| || Sbjct 1869 ATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTT 1928 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| |||||| || || || |||||| Sbjct 1929 CCCGTCAAAGTTTTCACGAAGATCTGCATA 1958 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || || ||||| |||||||||||| ||| | | | || || Sbjct 2205 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCG 2264 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | ||||| ||||||||||| || || ||||| ||||| Sbjct 2265 AGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGG 2324 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| || ||||||||| || || || | ||||||||| || Sbjct 2325 ATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTT 2384 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| |||||| || || || |||||| Sbjct 2385 CCCGTCAAAGTTTTCACGAAGATCTGCATA 2414 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || || ||||| |||||||||||| ||| | | | || Sbjct 1518 AAGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCC 1577 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || ||||||||| | ||||| ||||||||||| || || ||||| ||||| Sbjct 1578 TCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCT 1637 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| ||| || ||||||||| || || || | |||||| || Sbjct 1638 TGGATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATAGTC 1697 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| |||||| || || || |||||| Sbjct 1698 TTTCCCGTCAAAGTTTTCACGAAGATCTGCATA 1730 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || ||||| || || || || || || || |||||||||||| || | | ||||| Sbjct 1974 AAGACTAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGGGTCCGGCCGTCT 2033 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || || ||| | ||||| ||||||||||| || || ||||| ||||| Sbjct 2034 TCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATCCCTTCCTTGTCT 2093 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| || ||| ||| || ||||| ||| || || || | |||||| || Sbjct 2094 TGAATCTTTTGCTTCACAGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATAGTC 2153 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| |||||| || || || |||||| Sbjct 2154 TTTCCCGTCAAAGTTTTCACGAAGATCTGCATA 2186 >seq2450 Length=27238 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || || || || |||||||||||| ||| | | |||| || Sbjct 7420 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCG 7361 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | ||||| ||||||||||| ||||| ||||| ||||| | Sbjct 7360 AGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGAATACCTTCCTTGTCTTGA 7301 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || || ||||| || | || || || | |||||| || || Sbjct 7300 ATTTTTTGCTTGACGGCTTGGATGGTGTCAGAAGACTCGACCTCCAGGGTAATTGTCTTT 7241 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||||||||| ||||| ||||| Sbjct 7240 CCCGTCAAAGTTTTTACGAAAATCTGCAT 7212 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || || || || |||||||||||| ||| | | |||| Sbjct 9107 AAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCC 9048 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || ||||||||| | ||||| ||||||||||| ||||| ||||| ||||| Sbjct 9047 TCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGAATACCTTCCTTGTCT 8988 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| || || ||||| ||| || || || | |||||| || Sbjct 8987 TGAATTTTTTGCTTGACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATTGTC 8928 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| |||||| || || || |||||| Sbjct 8927 TTTCCCGTCAAAGTTTTCACGAAGATCTGCATA 8895 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || || ||||| |||||||||||| ||| | | |||| || Sbjct 7876 ACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCA 7817 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| ||| | ||||| ||||||||||| || || ||||| ||||| | Sbjct 7816 AGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGA 7757 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || || ||||| || | || || || | |||||| || || Sbjct 7756 ATCTTTTGCTTGACGGCTTGGATGGTGTCAGAAGACTCGACCTCAAGGGTAATAGTCTTT 7697 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| |||||| || |||||||||||| Sbjct 7696 CCCGTCAAAGTTTTCACGAAAATTTGCATA 7667 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || || || || |||||||||||| ||| | | |||| Sbjct 9563 AAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCC 9504 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || ||||||||| | ||||| ||||||||||| || || ||||| ||||| Sbjct 9503 TCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCT 9444 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| ||| || ||||||||| || || || | || || || Sbjct 9443 TGGATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACTTCGAGAGTGATAGTC 9384 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || ||||| || || || |||||| Sbjct 9383 TTACCGGTGAGCGTTTTGACGAAGATCTGCATA 9351 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || || ||||| |||||||||||| || | | | || || Sbjct 7648 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGACCATCCTCG 7589 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | ||||| ||||||||||| || || ||||| ||||| Sbjct 7588 AGCTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGG 7529 Query 15275 ATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| || ||| || || ||||| ||| || || || | |||||| || || Sbjct 7528 ATTTT-CTGTTTCACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATAGTCTT 7470 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||||||||| |||||||||||| Sbjct 7469 TCCCGTCAAAGTTTTTACGAAAATTTGCATA 7439 >seq1292 Length=4421 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || || || || |||||||||||| ||| | | ||||| Sbjct 268 AAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCT 209 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || || ||| | ||||| ||||||||||| || || || || ||||| Sbjct 208 TCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCCTCCTTGTCT 149 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| || || ||||| || | || || || | |||||| || Sbjct 148 TGGATTTTCTGCTTCACGGCTTGGATGGTGTCAGAAGACTCGACCTCAAGGGTAATTGTC 89 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||||||| || || |||||| Sbjct 88 TTTCCCGTCAAAGTTTTTACGAAGATCTGCATA 56 >seq1856 Length=6291 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || || || || |||||||||||| || | | ||||| Sbjct 6183 AAGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCT 6124 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || || ||| | || | |||||||||||| ||||| ||||| ||||| Sbjct 6123 TCCAATTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATACCTTCCTTGTCT 6064 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| ||| || ||||||||| | || || || | || || || Sbjct 6063 TGGATTTTCTGCTTCACAGCTTGGATGGTATCGGAAGACTCGACTTCGAGAGTGATAGTC 6004 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||| || || |||||||| Sbjct 6003 TTACCGGTGAGGGTTTTGACGAAGATTTGCAT 5972 >seq2282 Length=5406 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || || ||||| |||||||||||| ||| | | | || Sbjct 182 AAGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCC 241 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || ||||||||| | ||||| ||||||||||| || || ||||| ||||| Sbjct 242 TCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCT 301 Query 15272 CAAATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||| || ||| || || ||||| ||| || || || | |||||| || Sbjct 302 TGGATTTT-CTGTTTCACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATTGT 360 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||| |||||||||||| || ||||| Sbjct 361 CTTTCCCGTCAAAGTTTTTACAAAGATCTGCAT 393 >seq7632 Length=1044 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || || || || |||||||||||| ||| | | ||||| Sbjct 687 AAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCT 746 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || || ||| | ||||| ||||||||||| || || || || ||||| Sbjct 747 TCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCCTCCTTGTCT 806 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| || || || || || | || || || | |||||| || Sbjct 807 TGGATTTTCTGCTTCACGGCTTGGATAGTGTCAGAAGACTCGACCTCAAGGGTAATTGTC 866 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| |||||| || || || |||||| Sbjct 867 TTTCCCGTCAAAGTTTTCACGAAGATCTGCATA 899 >seq6235 Length=3334 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277 || ||||||||| | ||||| ||||||||||| || |||||||| ||||| ||| Sbjct 1577 TGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGAGGGATTCCTTCCTTGTCTTGAATC 1518 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 || ||| ||| || ||||||||| || || || | ||||| || || || Sbjct 1517 TTTTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACTTCGAGAGTAATCGTCTTTCCC 1458 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| |||||| || |||||||||||| Sbjct 1457 GTCAAAGTTTTCACGAAAATTTGCATA 1431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362138021243589