Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2450 100 2e-16 seq1292 95.1 8e-15 seq7632 91.5 9e-14 seq1860 91.5 9e-14 seq6235 89.7 3e-13 seq147 86.0 4e-12 seq1856 84.2 1e-11 >seq2450 Length=27238 Score = 100 bits (110), Expect = 2e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | || ||||| || || || |||||||| || | | || | | Sbjct 8882 CGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCG 8823 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||| || || || || ||||| ||||| | ||| || ||||| || Sbjct 8822 TCCTCGAGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTG 8763 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| |||||| || | ||| || |||||| | | || || ||||| || Sbjct 8762 TCTTGAATCTTCTGTTTCACGGCTTGGATGGTGTCGGAAGACTCGACTTCGAGAGTGATA 8703 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTATGGTT 33379 || || || || || || || ||||||||||||||| || | ||| Sbjct 8702 GTCTTCCCGGTGAGGGTCTTGACGAAAATTTGCATGGTTGTTGTT 8658 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || || || ||||| || |||||||| || | || | || || Sbjct 7648 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGACCATCCTCG 7589 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||||| || || || ||||| ||||| | ||| || ||||| || || Sbjct 7588 AGCTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGG 7529 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || |||||| || | ||| || |||||| || | || || || || || || ||| Sbjct 7528 ATTTTCTGTTTCACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATAGTCTTT 7469 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| | ||||||||||||||||||||| Sbjct 7468 CCCGTCAAAGTTTTTACGAAAATTTGCAT 7440 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || || || || || || |||||||| || | | || | ||| || Sbjct 7420 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCG 7361 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||||| ||| || || || ||||| ||||| | ||| || ||||| || || | Sbjct 7360 AGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGAATACCTTCCTTGTCTTGA 7301 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || || || || | ||| || ||||| | | || ||||| || || || ||| Sbjct 7300 ATTTTTTGCTTGACGGCTTGGATGGTGTCAGAAGACTCGACCTCCAGGGTAATTGTCTTT 7241 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTTTATGGTT 33379 ||||| | ||||||||||||||| |||||| || | ||| Sbjct 7240 CCCGTCAAAGTTTTTACGAAAATCTGCATGGTTGTTGTT 7202 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | ||||| || ||||| || |||||||| || | | || | ||| || Sbjct 7876 ACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCA 7817 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||||| || || || || ||||| ||||| | || || ||||| || || | Sbjct 7816 AGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGA 7757 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| || || || | ||| || ||||| | | || || || || || || ||| Sbjct 7756 ATCTTTTGCTTGACGGCTTGGATGGTGTCAGAAGACTCGACCTCAAGGGTAATAGTCTTT 7697 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| | |||||| |||||||||||||| Sbjct 7696 CCCGTCAAAGTTTTCACGAAAATTTGCAT 7668 >seq1292 Length=4421 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | || || || || || || |||||||| || | | || | | Sbjct 271 CGCAAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCG 212 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||||||||| || || || ||||| ||||| | ||| ||||| || || Sbjct 211 TCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCCTCCTTG 152 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || || ||| || || | ||| || ||||| | | || || || || || Sbjct 151 TCTTGGATTTTCTGCTTCACGGCTTGGATGGTGTCAGAAGACTCGACCTCAAGGGTAATT 92 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| | |||||||||||| || ||||| Sbjct 91 GTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 57 >seq7632 Length=1044 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | || || || || || || |||||||| || | | || | | Sbjct 684 CGCAAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCG 743 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||||||||| || || || ||||| ||||| | ||| ||||| || || Sbjct 744 TCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCCTCCTTG 803 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || || ||| || || | ||| || ||||| | | || || || || || Sbjct 804 TCTTGGATTTTCTGCTTCACGGCTTGGATAGTGTCAGAAGACTCGACCTCAAGGGTAATT 863 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| | |||||| ||||| || ||||| Sbjct 864 GTCTTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 898 >seq1860 Length=4765 Score = 91.5 bits (100), Expect = 9e-14 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || || || ||||| || |||||||| || | | || | || || Sbjct 2433 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCG 2492 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||||| ||| || || || ||||| ||||| | ||| |||||||| || || Sbjct 2493 AGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGG 2552 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || ||| || || | ||| || || ||| || | || || || || || || ||| Sbjct 2553 ATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTT 2612 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTTTATGGT 33378 ||||| | |||||| ||||| ||||||||||| |||| Sbjct 2613 CCCGTCAAAGTTTTCACGAAGATTTGCATGTTGTTGGT 2650 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || || || | || || || || || || |||||||| || | | | | Sbjct 1971 CGCAAGACTAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGGGTCCGGCCG 2030 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||||||||| || || || ||||| ||||| | || || ||||| || Sbjct 2031 TCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATCCCTTCCTTG 2090 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| || || || | ||| || |||||| || | || || || || || Sbjct 2091 TCTTGAATCTTTTGCTTCACAGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATA 2150 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| | |||||| ||||| || ||||| Sbjct 2151 GTCTTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 2185 >seq6235 Length=3334 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || || || || || || |||||||| || | | || | ||| || Sbjct 1412 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCA 1353 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||||| || || || ||||| ||||| | ||| || ||||| || || Sbjct 1352 AGCTGCTTTCCCGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGG 1293 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| || || || | ||| || |||||| || | || || || || ||||| ||| Sbjct 1292 ATCTTTTGCTTCACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATCGTCTTT 1233 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| | |||||||||||| || ||||| Sbjct 1232 CCCGTCAAAGTTTTTACGAAGATCTGCAT 1204 >seq147 Length=786 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 33188 ATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGT 33247 || |||||||| || | | || | ||| || | ||||| ||| || || || ||| Sbjct 3 ATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGT 62 Query 33248 TGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTG 33307 || ||||| | ||| || ||||| || || |||| |||||| || | ||| || ||| Sbjct 63 TGTTGGTCAGGGGGAATACCTTCCTTGTCTTGAATCTTCTGTTTCACGGCTTGGATGGTG 122 Query 33308 TCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGC 33367 ||| | | || || ||||| || || || || || || || || |||||||||||| Sbjct 123 TCGGAAGACTCGACTTCGAGAGTGATAGTCTTCCCGGTGAGGGTCTTGACGAAAATTTGC 182 Query 33368 ATGTTTATGGTT 33379 ||| || | ||| Sbjct 183 ATGGTTGTTGTT 194 >seq1856 Length=6291 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | || || || || || || |||||||| || | || | | Sbjct 6186 CGCAAGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCG 6127 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||||||||| || || | ||||| ||||| | ||| || ||||| || Sbjct 6126 TCTTCCAATTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATACCTTCCTTG 6067 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || || ||| || || | ||| || || ||| | | || || ||||| || Sbjct 6066 TCTTGGATTTTCTGCTTCACAGCTTGGATGGTATCGGAAGACTCGACTTCGAGAGTGATA 6007 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || ||||| ||||| ||||||||| Sbjct 6006 GTCTTACCGGTGAGGGTTTTGACGAAGATTTGCATG 5971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318741355883442