Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1860 113 1e-19 seq2450 107 4e-18 seq1856 102 2e-16 seq6235 98.7 2e-15 seq2282 95.1 3e-14 >seq1860 Length=4765 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| ||||| || || || || || || || | |||||||| | ||| ||||| Sbjct 1989 GTAGATTCCTTCTGGATGTTGTAATCGGAAAGGGTCCGGCCGTCTTCCAATTGCTTTCCG 2048 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||||| |||||||| || ||||| || || ||||||||| || Sbjct 2049 GCGAAGATCAATCGTTGTTGGTCAGGAGGGATCCCTTCCTTGTCTTGAATCTTTTGCTTC 2108 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||| || | ||| ||| | || ||||| || ||||||||||| || || | ||| Sbjct 2109 ACAGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATAGTCTTTCCCGTCAAAGTT 2168 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 2169 TTCACGAAGATCTGCAT 2185 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || || || || ||||| | ||| || || || || || ||| Sbjct 1533 GTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCGAGCTGCTTGCCA 1592 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || | | ||||| ||||| || || ||||| || || || || || ||||| Sbjct 1593 GCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTC 1652 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||| || | ||||||| | || ||||| || ||||||||||| || || | || Sbjct 1653 -ACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATAGTCTTTCCCGTCAAAGT 1711 Query 104542 TTTTACAAATATCTGCAT 104559 ||| || || |||||||| Sbjct 1712 TTTCACGAAGATCTGCAT 1729 >seq2450 Length=27238 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| ||||| || || || || || ||||| | |||||| || || || || ||| Sbjct 9548 GTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCA 9489 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || | | ||||| ||||| || || ||||| || || || || || ||||| Sbjct 9488 GCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATTTTCTGCTTC 9429 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||| || | ||||||| | || || || || || ||||||||||| || || || Sbjct 9428 -ACAGCTTGGATGGTATCGGAGGACTCGACTTCGAGAGTGATAGTCTTACCGGTGAGCGT 9370 Query 104542 TTTTACAAATATCTGCAT 104559 ||| || || |||||||| Sbjct 9369 TTTGACGAAGATCTGCAT 9352 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || || || || ||||| | |||||| || || || || ||| Sbjct 9320 GTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCA 9261 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||||| ||||| || || ||||| || || |||||||| ||| Sbjct 9260 GCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGAATCTTCTGTTTC 9201 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || | ||||||| | || || || || || ||||||||||| || || || Sbjct 9200 ACGGCTTGGATGGTATCGGAGGACTCAACTTCGAGAGTGATAGTCTTACCGGTGAGGGTC 9141 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 9140 TTGACGAAGATCTGCAT 9124 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || || || || ||||| | |||||| || || || || || Sbjct 7864 GTCGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCAAGCTGCTTGCCG 7805 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||||| |||||||| || ||||| || || ||||||||| || Sbjct 7804 GCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGAATCTTTTGCTTG 7745 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || | ||| || || || ||||| || ||||||||||| || || | ||| Sbjct 7744 ACGGCTTGGATGGTGTCAGAAGACTCGACCTCAAGGGTAATAGTCTTTCCCGTCAAAGTT 7685 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 7684 TTCACGAAAATTTGCAT 7668 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || || || || || || | ||| || || || || ||||| Sbjct 7636 GTAGATTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGACCATCCTCGAGCTGCTTTCCG 7577 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||||| ||||| || || ||||| || || || || || ||| Sbjct 7576 GCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATTTTCTGTTTC 7517 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || | ||| ||| | || ||||| || ||||||||||| || || | ||| Sbjct 7516 ACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATAGTCTTTCCCGTCAAAGTT 7457 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || || ||||| Sbjct 7456 TTTACGAAAATTTGCAT 7440 >seq1856 Length=6291 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| ||||| || || || || || || || | |||||||| | ||| ||||| Sbjct 6168 GTAGATTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCTTCCAATTGCTTTCCG 6109 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||||| || || || || ||||| || || || || || ||||| Sbjct 6108 GCGAAGATGAGGCGTTGTTGGTCGGGGGGAATACCTTCCTTGTCTTGGATTTTCTGCTTC 6049 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||| || | ||||||| || || || || || || ||||||||||| || || || Sbjct 6048 -ACAGCTTGGATGGTATCGGAAGACTCGACTTCGAGAGTGATAGTCTTACCGGTGAGGGT 5990 Query 104542 TTTTACAAATATCTGCAT 104559 ||| || || || ||||| Sbjct 5989 TTTGACGAAGATTTGCAT 5972 >seq6235 Length=3334 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || || || || || || | || || || || || || || Sbjct 1172 GTAGATTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGCCCATCCTCGAGCTGCTTGCCG 1113 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||||| ||||| || || ||||| || || ||||||||| || Sbjct 1112 GCGAAGATGAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGAATCTTTTGCTTC 1053 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||| || | ||| ||| | ||| || || || || ||||||||||| || || || Sbjct 1052 ACAGCTTGGATGGTGTCGGAGGATTCGACTTCGAGAGTGATAGTCTTACCGGTGAGGGTC 993 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 992 TTGACAAAGATCTGCAT 976 >seq2282 Length=5406 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || || || || ||||| | ||| || || || || || ||| Sbjct 197 GTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCGAGCTGCTTGCCA 256 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||||| ||||| || || ||||| || || || || || ||| Sbjct 257 GCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATTTTCTGTTTC 316 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || | ||| ||| | || ||||| || ||||| ||||| || || | ||| Sbjct 317 ACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATTGTCTTTCCCGTCAAAGTT 376 Query 104543 TTTACAAATATCTGCAT 104559 |||||||| |||||||| Sbjct 377 TTTACAAAGATCTGCAT 393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151260775867932