Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2450 98.7 8e-16 seq6235 96.9 3e-15 seq1860 87.8 2e-12 seq1856 87.8 2e-12 seq5736 84.2 2e-11 >seq2450 Length=27238 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTC 48573 || || || ||||| || ||||| || ||||||||||| | | | || || |||| Sbjct 9563 AAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTG-CGACCGTC 9505 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 ||| |||||||| || || | || || || || || || || | || ||||||||| Sbjct 9504 CTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTC 9445 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||||||||||| | || |||||||||| ||||| |||| || || || Sbjct 9444 TTGGATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACTTCGAGAGTGATAGT 9385 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||| ||||| || || |||||||| Sbjct 9384 CTTACCGGTGAGCGTTTTGACGAAGATCTGCAT 9352 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||| ||||||||||| | | | || || ||||||| |||||||| ||| || | Sbjct 7858 TCCTTTTGGATGTTGTAATCGGAAAGAGTG-CGACCGTCCTCAAGCTGCTTGCCGGCGAA 7800 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || || || || || || | || ||||||||| ||| || ||||||| | Sbjct 7799 GATCAATCGTTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGAATCTTTTGCTTGACGGC 7740 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 ||||| || | |||||| ||| | || || || || || || | ||||||||| Sbjct 7739 TTGGATGGTGTCAGAAGACTCGACCTCAAGGGTAATAGTCTTTCCCGTCAAAGTTTTCAC 7680 Query 48715 AAAAATCTGCAT 48726 ||||| ||||| Sbjct 7679 GAAAATTTGCAT 7668 Score = 86.0 bits (94), Expect = 5e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || ||||||||||| | | | || || ||||||| |||||||| ||| || Sbjct 8859 CTCCTTCTGGATGTTGTAATCGGAAAGAGTG-CGACCGTCCTCGAGCTGCTTGCCGGCGA 8801 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || || || || || || || | || ||||||||| ||| ||||| || | | Sbjct 8800 AGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGAATCTTCTGTTTCACGG 8741 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 ||||| |||| |||||| |||| || || || || |||||||| || || | Sbjct 8740 CTTGGATGGTGTCGGAAGACTCGACTTCGAGAGTGATAGTCTTCCCGGTGAGGGTCTTGA 8681 Query 48714 CAAAAATCTGCATCGT 48729 | ||||| ||||| || Sbjct 8680 CGAAAATTTGCATGGT 8665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||| || ||||||||||| | | | || || ||||||| |||||||| || || | Sbjct 7402 TCCTTCTGGATGTTGTAATCGGAAAGAGTG-CGACCGTCCTCGAGCTGCTTGCCAGCGAA 7344 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || || || || || || | || ||||||||| |||||| ||||||| | Sbjct 7343 GATCAATCGTTGTTGGTCAGGGGGAATACCTTCCTTGTCTTGAATTTTTTGCTTGACGGC 7284 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 ||||| || | |||||| ||| | || || || || || || | |||||| || Sbjct 7283 TTGGATGGTGTCAGAAGACTCGACCTCCAGGGTAATTGTCTTTCCCGTCAAAGTTTTTAC 7224 Query 48715 AAAAATCTGCATCGT 48729 ||||||||||| || Sbjct 7223 GAAAATCTGCATGGT 7209 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || ||||||||||| | | | || || ||||||| |||||||| || || Sbjct 9087 CTCCTTCTGGATGTTGTAATCGGAAAGAGTG-CGACCGTCCTCGAGCTGCTTGCCAGCGA 9029 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || || || || || || || | || ||||||||| |||||| ||||||| | Sbjct 9028 AGATCAATCGTTGTTGGTCAGGGGGAATACCTTCCTTGTCTTGAATTTTTTGCTTGACGG 8969 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 ||||| |||| ||||| ||| | || || || || || || | |||||||| Sbjct 8968 CTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATTGTCTTTCCCGTCAAAGTTTTCA 8909 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 8908 CGAAGATCTGCAT 8896 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || ||||||||||| | | | || || ||||||| |||||||| || || Sbjct 9315 CTCCTTCTGGATGTTGTAATCGGAAAGAGTG-CGACCGTCCTCGAGCTGCTTGCCAGCGA 9257 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || || || || || || || | || ||||||||| ||| ||||| || | | Sbjct 9256 AGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGAATCTTCTGTTTCACGG 9197 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 |||||||||| ||||| |||| || || || ||||||||||| || || | Sbjct 9196 CTTGGATGGTATCGGAGGACTCAACTTCGAGAGTGATAGTCTTACCGGTGAGGGTCTTGA 9137 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 9136 CGAAGATCTGCAT 9124 >seq6235 Length=3334 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||| || ||||||||||||| || || || ||||||| |||||||| ||| || | Sbjct 938 TCCTTCTGGATGTTGTAATCAG-AAAGGGTGCGACCGTCCTCGAGCTGCTTCCCGGCGAA 880 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || || || || || || | || ||||||||| || || ||||| | || Sbjct 879 GATCAATCGTTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGC 820 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 ||||| |||| |||||| ||||| || ||||| || || || || ||||| || Sbjct 819 TTGGATGGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTTTTGAC 760 Query 48715 AAAAATCTGCATCGT 48729 ||| |||||||| || Sbjct 759 AAAGATCTGCATGGT 745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||| ||||||||||| | || || ||| | ||||| |||||||| ||| || | Sbjct 1166 TCCTTTTGGATGTTGTAATCGGA-AAGGGTGCGCCCATCCTCGAGCTGCTTGCCGGCGAA 1108 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | || || || || || | || ||||||||| ||| || ||||| | || Sbjct 1107 GATGAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGAATCTTTTGCTTCACAGC 1048 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 ||||| |||| || || |||| || || || ||||||||||| || || || Sbjct 1047 TTGGATGGTGTCGGAGGATTCGACTTCGAGAGTGATAGTCTTACCGGTGAGGGTCTTGAC 988 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 987 AAAGATCTGCAT 976 >seq1860 Length=4765 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||| ||||||||||| | | | || || | ||||| |||||||| || || | Sbjct 1767 TCCTTTTGGATGTTGTAATCGGAAAGAGTG-CGACCATCCTCGAGCTGCTTGCCAGCGAA 1825 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || || || || || || | | ||||||||| ||||||||||| | || Sbjct 1826 GATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACAGC 1885 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 |||||||||| ||||| ||| | || ||||| || || || | ||||||||| Sbjct 1886 TTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTTCCCGTCAAAGTTTTCAC 1945 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 1946 GAAGATCTGCAT 1957 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||| ||||||||||| | | | || || | ||||| |||||||| || || | Sbjct 2223 TCCTTTTGGATGTTGTAATCGGAAAGAGTG-CGACCATCCTCGAGCTGCTTGCCAGCGAA 2281 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || || || || || || | | ||||||||| ||||||||||| | || Sbjct 2282 GATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACAGC 2341 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 |||||||||| ||||| ||| | || ||||| || || || | ||||||||| Sbjct 2342 TTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTTCCCGTCAAAGTTTTCAC 2401 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 2402 GAAGATCTGCAT 2413 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||| ||||||||||| | | | || || | ||||| |||||||| || || | Sbjct 1539 TCCTTTTGGATGTTGTAATCGGAAAGAGTG-CGACCATCCTCGAGCTGCTTGCCAGCGAA 1597 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || || || || || || | | ||||||||| ||||||||||| | || Sbjct 1598 GATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACAGC 1657 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 |||||||||| ||||| ||| | || || || || || || | ||||||||| Sbjct 1658 TTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATAGTCTTTCCCGTCAAAGTTTTCAC 1717 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 1718 GAAGATCTGCAT 1729 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||| ||||||||||| | | | || || | ||||| |||||||| || || | Sbjct 2451 TCCTTTTGGATGTTGTAATCGGAAAGAGTG-CGACCATCCTCGAGCTGCTTGCCAGCGAA 2509 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || || || || || || | | ||||||||| ||||||||||| | || Sbjct 2510 GATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACAGC 2569 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 |||||||||| ||||| ||| | || ||||| || || || | ||||||||| Sbjct 2570 TTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTTCCCGTCAAAGTTTTCAC 2629 Query 48715 AAAAATCTGCAT 48726 || || ||||| Sbjct 2630 GAAGATTTGCAT 2641 >seq1856 Length=6291 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||| || ||||||||||| | || || || |||| |||| ||||| ||| || | Sbjct 6162 TCCTTCTGGATGTTGTAATCGGA-AAGGGTGCGGCCGTCTTCCAATTGCTTTCCGGCGAA 6104 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | || || || || || | || ||||||||| ||||||||||| | || Sbjct 6103 GATGAGGCGTTGTTGGTCGGGGGGAATACCTTCCTTGTCTTGGATTTTCTGCTTCACAGC 6044 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 |||||||||| |||||| |||| || || || ||||||||||| ||||| || Sbjct 6043 TTGGATGGTATCGGAAGACTCGACTTCGAGAGTGATAGTCTTACCGGTGAGGGTTTTGAC 5984 Query 48715 AAAAATCTGCATCGT 48729 || || ||||| || Sbjct 5983 GAAGATTTGCATGGT 5969 >seq5736 Length=2708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || ||||||||||| | | | || || | ||||| |||||||| ||| || Sbjct 2653 CTCCTTCTGGATGTTGTAATCGGAAAGAGTG-CGACCATCCTCGAGCTGCTTTCCGGCGA 2595 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || || || || || || || | || ||||||||| ||||||||||| | | Sbjct 2594 AGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATTTTCTGCTTCACGG 2535 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 |||||||||| ||||| |||| || || || || |||||||| || || | Sbjct 2534 CTTGGATGGTATCGGAGGACTCAACTTCGAGAGTGATAGTCTTCCCGGTGAGGGTCTTGA 2475 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 2474 CGAAGATCTGCAT 2462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421203304923329