Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3391 172 9e-39 seq7640 170 3e-38 seq8024 159 5e-35 seq6162 132 8e-27 seq7163 129 9e-26 seq3422 87.8 3e-13 >seq3391 Length=2106 Score = 172 bits (190), Expect = 9e-39 Identities = 188/250 (75%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||||||||| ||||||||||| ||||| ||||| ||||||||||||| Sbjct 1844 TCTTCGCGACAACATCCAAGGCATCACCAAGCCTGCTATTCGTCGATTGGCTCGTCGTGG 1903 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| || ||| |||| || ||| | ||||| |||| | ||| ||||||| || Sbjct 1904 AGGAGTGAAACGTATCTCCGGGTTGATTTATGAGGAGACCAGAACTGTCTTGAAGACTTT 1963 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| || || | ||||||| | || ||||||||||| | | |||||||| Sbjct 1964 CTTGGAGAATGTGATTCGTGATGCTGTGACTTACACCGAGCACGCCAGGAGGAAGACTGT 2023 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| || |||||| |||| ||||| ||||| | |||||||| | | ||||| || || Sbjct 2024 CACTTCTATGGATGTCGTGTATGCTTTGAAGAGGCAAGGCCGCACCTTGTATGGGTTCGG 2083 Query 16693 AAGTTAATCT 16702 ||||| || Sbjct 2084 TGGTTAAGCT 2093 >seq7640 Length=1042 Score = 170 bits (188), Expect = 3e-38 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||| |||||||| || |||||||| ||||||||||| ||||||| ||||| Sbjct 504 CTTCGTGATAATATCCAAGGGATTACCAAGCCTGCTATCCGTCGATTGGCTCGCCGTGGG 563 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| ||||||| | ||||||| || | | ||||||||| | ||| Sbjct 564 GGAGTGAAGCGTATCTCTGGGCTTATCTATGAGGAAACCAGGACTGTTTTGAAAACTTTC 623 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||||||| ||||||| | || ||||||||||||| | |||||||| Sbjct 624 CTCGAGAATGTTATCCGTGATGCTGTGACTTACACCGAGCACGCTAGGAGGAAGACTGTT 683 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || || ||||| | || ||||| ||||| | ||||| | | ||||||| ||||| Sbjct 684 ACTTCTATGGACGTTGTGTATGCTTTGAAGAGGCAAGGGAGGACTCTTTATGGATTTGG 742 >seq8024 Length=9797 Score = 159 bits (176), Expect = 5e-35 Identities = 183/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || ||||||||||| || |||||||| ||||||||||| |||| | | || Sbjct 7887 CTTCGTGACAACATCCAAGGTATTACCAAGCCTGCTATCCGTCGATTGGCAAGGAGGGGG 7828 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || ||| ||||||| ||| | ||||| |||| || |||||||||| ||| Sbjct 7827 GGAGTGAAACGTATCTCTGGGTTGATTTATGAGGAGACACGAACCGTTTTGAAGACTTTC 7768 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| || | ||||||| | || ||||||||||| | | | ||||||||| Sbjct 7767 TTGGAGAACGTGATTCGTGATGCTGTGACTTACACCGAGCACGCCAGAAGGAAGACTGTC 7708 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || || |||||| | || ||||| ||||| || ||||| | | | |||||||| || Sbjct 7707 ACTTCTATGGATGTTGTGTATGCCTTGAAGCGACAAGGAAGGACTCTCTATGGTTTCGGT 7648 Query 16694 AGTTAA 16699 ||||| Sbjct 7647 GGTTAA 7642 >seq6162 Length=12894 Score = 132 bits (146), Expect = 8e-27 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 ||||||||||| ||||||| ||||| ||||| || ||| ||||||| | |||| || Sbjct 1482 GCTATCCGTCGATTGGCTCGCCGTGGCGGAGTGAAACGTATCTCTGGTCTCATCTACGAG 1541 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTAT 16606 || | | | ||| ||||||| ||||||| ||| |||||| | ||||||| | || Sbjct 1542 GAAACTAGAACTGTGTTGAAGACCTTCCTCGAGAACGTTATTCGTGATGCTGTGACTTAC 1601 Query 16607 ACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGT 16666 |||||||| || | | |||||||| || || |||||| | || ||||| ||||| | Sbjct 1602 ACCGAGCATGCCAGGAGGAAGACTGTTACTTCTATGGATGTTGTGTATGCTTTGAAGAGG 1661 Query 16667 CAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||||||| | | ||||| || || ||||| || Sbjct 1662 CAAGGCCGCACCTTGTATGGGTTCGGTGGTTAAACT 1697 Score = 125 bits (138), Expect = 1e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || ||||||||||| ||||||||||| ||||||||||| ||||||| ||||| Sbjct 148 CTTCGCGACAACATCCAAGGTATCACCAAGCCTGCTATCCGTCGATTGGCTCGCCGTGGC 89 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || ||| ||||||| | |||| || || | | ||| ||||||| |||| Sbjct 88 GGAGTGAAACGTATCTCTGGTCTCATCTACGAGGAAACCAGAACTGTGTTGAAGACCTTC 29 Query 16574 CTCAAGACCGTTATCCATGATGCT 16597 ||| ||| |||||| | ||||||| Sbjct 28 CTCGAGAACGTTATTCGTGATGCT 5 >seq7163 Length=1155 Score = 129 bits (142), Expect = 9e-26 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || ||||||||||| ||||||||||| ||||||||||| ||||||| ||||| Sbjct 1008 CTTCGCGACAACATCCAAGGTATCACCAAGCCTGCTATCCGTCGATTGGCTCGCCGTGGC 1067 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || ||| ||||||| | |||| || || | | | ||| ||||||| |||| Sbjct 1068 GGAGTGAAACGTATCTCTGGTCTCATCTACGAGGAAACTAGAACTGTGTTGAAGACCTTC 1127 Query 16574 CTCAAGACCGTTATCCATGATGCT 16597 ||| ||| |||||| | ||||||| Sbjct 1128 CTCGAGAACGTTATTCGTGATGCT 1151 >seq3422 Length=2138 Score = 87.8 bits (96), Expect = 3e-13 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || |||| ||||||||| ||||| | ||| |||||| | || |||||||||| Sbjct 882 TCTTGCGTGATACCATCCAAGGGATCACAAGACCAACTATCCAAAGACTTGCTCGTCGTG 823 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | ||||| ||||| ||| ||| |||||||||| | ||| ||| |||||| | | Sbjct 822 GAGGAGTGAAGCGACAAAGTGGGTTGATCTATGAAGAAACTCGATGTGTGTTGAAGGTGT 763 Query 16572 TCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 | | | || |||| || || || | | ||| |||| ||||| | | | |||||| Sbjct 762 TTTTGAGGAAAATTATTCAAGACTCTGTGCTTTATGCCGAACACGCGAGAAGAAAGACTA 703 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGA 16661 || || | ||||| | | ||| |||| Sbjct 702 TCCAACCCGTTGATATTATTTGTGCTTTGA 673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79066670429997