Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq3609 98.7 2e-16 seq2950 87.8 4e-13 >seq3609 Length=3383 Score = 98.7 bits (108), Expect = 2e-16 Identities = 168/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 4471 GATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTA 4530 || || || |||||| || ||||||| | |||| ||||| | ||| ||||||||| Sbjct 1039 GACAAGAAGAATTATATTGTTCACTACAGAAATCTGAAATTGTATTTGAGTTTAGGTTTG 1098 Query 4531 GTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATAT 4590 ||| || || || | |||| ||| ||| ||| ||| ||| | ||| | || Sbjct 1099 AAAATTACAAAGATCCATCGAGTCATGAGTTTTACACAAAAAGAATGGATGAAACCTTAC 1158 Query 4591 ATCGATAAAAATACCGCATGCCGAAA-ACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTA 4649 || ||| || || | | ||||| | || ||||||||| || |||||| | ||||| Sbjct 1159 ATTGATTTTAACACGGAACAACGAAAGAAGAG-TAAGAATGATTTTGAAAAAGATTTTTA 1217 Query 4650 TAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATAAAGA 4709 || |||||||| || | ||||||||||| || ||||| |||| || | ||||||| Sbjct 1218 CAAGTTAATGAACAACTCTGTTTTTGGAAAAACTATGGAAGATGTTAGACGACATAAAGA 1277 Query 4710 T 4710 | Sbjct 1278 T 1278 >seq2950 Length=22465 Score = 87.8 bits (96), Expect = 4e-13 Identities = 170/250 (68%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 4471 GATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTA 4530 ||||| || ||||| || |||| || | |||||| ||| | |||| |||||| ||| Sbjct 11072 GATAAGAAAAATTACATTGTTCATTACAGAAATTTAAAAATGTATTTAAGTTTAGGATTA 11013 Query 4531 GTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATAT 4590 ||| || || |||| ||| ||| ||| ||| | ||| | ||| | || Sbjct 11012 AAAATTACAAAGATTCACCGAGTTATGAGCTTTACACAAAAGGCATGGATGAAACCGTAC 10953 Query 4591 ATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTAT 4650 ||| || || || | | ||||||| | ||| ||||| || |||||| | || || Sbjct 10952 ATCAATTTTAACACTGAACAACGAAAACAAAGTAAAAATGATTTTGAAAAAGATTTCTAC 10893 Query 4651 AAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAA--ATATAAAG 4708 ||||||||||| || | || ||||| || || ||||| ||||| |||| || ||| Sbjct 10892 AAATTAATGAACAACTCTGTATTTGGGAAAACCATGGAAAATGTTAGAAATCGTAAAAAA 10833 Query 4709 ATATATATTT 4718 || |||||| Sbjct 10832 GTAGATATTT 10823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97963546212266