Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6235 107 2e-18 seq2282 107 2e-18 seq5736 86.0 5e-12 seq2450 86.0 5e-12 >seq6235 Length=3334 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || || ||||| ||||||| ||||||||||| || | Sbjct 1432 ATGCAAATTTTCGTGAAAACTTTGACGGGAAAGACGATTACTCTCGAAGTCGAGTCCTCC 1491 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||| | || || ||||||||| ||||| ||||| || ||||| || ||| Sbjct 1492 GATACCATCCAAGCTGTGAAGCAAAAGATTCAAGACAAGGAAGGAATCCCTCCTGACCAA 1551 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || || |||| | || |||||||| ||||| |||| Sbjct 1552 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATG 1588 >seq2282 Length=5406 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||||||||| || || ||||| | |||||| | || |||||| || | Sbjct 393 ATGCAGATCTTTGTAAAAACTTTGACGGGAAAGACAATTACCCTTGAGGTCGAGTCCTCC 334 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||| | || ||||| || || ||||| ||||| || || || || ||| Sbjct 333 GACACCATCCAAGCCGTGAAACAGAAAATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 274 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||| | || |||||||| ||||| |||| | | | |||||| ||| Sbjct 273 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACAAC 214 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| |||||||| Sbjct 213 ATCCAAAAGGAATCTAC 197 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || |||||||| || || ||||| |||| || ||||||||||| | | Sbjct 165 ATGCAGATCTTCGTAAAAACTTTGACGGGAAAGACGATCACTCTCGAAGTCGAGTCTTCC 106 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||| | || ||||| || || ||||| ||||| || || || || ||| Sbjct 105 GACACCATCCAAGCTGTGAAACAGAAAATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 46 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 || || |||| | || ||||||||| ||||| || Sbjct 45 CAACGATTGATCTTCGCCGGCAAGCAGCTCGAGGA 11 >seq5736 Length=2708 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || ||||| | || || ||||||||||| || | Sbjct 2234 ATGCAAATCTTCGTCAAAACCCTCACAGGAAAGACTATCACTCTCGAAGTCGAGTCCTCC 2293 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||| | || || || || || ||||| ||||| || || || || ||| Sbjct 2294 GACACCATCCAAGCCGTGAAGCAGAAAATCCAAGACAAGGAAGGTATTCCCCCTGACCAA 2353 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||| | || ||| ||||| ||||| |||| | | | |||||| ||| Sbjct 2354 CAACGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACAAC 2413 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || ||||| Sbjct 2414 ATCCAGAAGGAGTCTAC 2430 >seq2450 Length=27238 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || || | || || ||||||||||| | | Sbjct 8668 ATGCAAATTTTCGTCAAGACCCTCACCGGGAAGACTATCACTCTCGAAGTCGAGTCTTCC 8727 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||| | || ||||| |||||| ||||| ||||| || || || || ||| Sbjct 8728 GACACCATCCAAGCCGTGAAACAGAAGATTCAAGACAAGGAAGGTATCCCCCCTGACCAA 8787 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||| | || ||||||||| ||||| || | | | | |||||| ||| Sbjct 8788 CAACGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACAAC 8847 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || ||||| Sbjct 8848 ATCCAGAAGGAGTCTAC 8864 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || || ||||||||||| || | Sbjct 9352 ATGCAGATCTTCGTCAAAACGCTCACCGGTAAGACTATCACTCTCGAAGTCGAGTCCTCC 9411 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||| | || || || || || ||||| ||||| || || || || ||| Sbjct 9412 GATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 9471 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||| | || |||||||| ||||| || | | | | |||||| ||| Sbjct 9472 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACAAC 9531 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAAT 24225 || || || |||||||| |||| || || || | | | ||||||| ||||| Sbjct 9532 ATCCAGAAGGAATCTACTCTTCACTTGGTCTTGCGCCTTCGTGGAGGACAATAAT 9586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429887117485995