Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2582 161 2e-34 seq2332 156 9e-33 seq6480 96.9 7e-15 seq5599 96.9 7e-15 seq4898 96.9 7e-15 seq2450 96.9 7e-15 seq2384 96.9 7e-15 seq2040 96.9 7e-15 seq1810 96.9 7e-15 seq1748 96.9 7e-15 seq1082 96.9 7e-15 seq8260 84.2 4e-11 seq5054 84.2 4e-11 seq1933 84.2 4e-11 seq1344 84.2 4e-11 seq1263 84.2 4e-11 >seq2582 Length=22561 Score = 161 bits (178), Expect = 2e-34 Identities = 344/512 (67%), Gaps = 4/512 (1%) Strand=Plus/Plus Query 218565 GCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGC 218624 |||||| ||||| | || || ||||| | |||||| ||||| |||||||| || | Sbjct 9956 GCGTTCGATTCCTTGTGTTGTTGATGGGTTGAAGCCAGGCCAGCGAAAGATCCTTTTCTC 10015 Query 218625 CGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATC 218684 |||||| || | || | || || |||||||||||||| ||||||||| || Sbjct 10016 ATGTTTCAAGAGGGATTTGAAGAAGGATATCAAGGTCGCTCAGTTGAGTGGTTATGTCTC 10075 Query 218685 CGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGC 218744 ||| | |||| ||| || ||||| ||| || || ||| | || | || ||||| Sbjct 10076 CGAGAAGTCTGCCTATCACCACGGCGAGGCAAGCCTCCAGTCCACGATCATTGGGATGGC 10135 Query 218745 ACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTC 218804 || | | ||| || ||||| ||| ||||| | || | |||| |||||||||||| Sbjct 10136 CCAAAATTTTGTTGGGAGTAATAACGTGAACCTCCTCCAGCCCAGCGGTCAGTTTGGGAG 10195 Query 218805 TCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCC 218864 ||||| ||| || |||||| ||| | || | || | ||| || | ||||| Sbjct 10196 CCGTCTGCAGGGCGGGAAGGATTCTGCAAGTCCCCGTTACA--TTTTCACACGCCTCGCC 10253 Query 218865 --CGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGAC 218922 |||| || ||||| | | || ||| | | || || || || ||||| Sbjct 10254 AAAATGACTCGGTTTTTGTTCCCCGAAACTGACGATAAGGTTCTCAAATACCTCGAGGAT 10313 Query 218923 GATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAAT 218982 ||||| | || |||||||| |||||||| || || | ||||| | | ||||| ||| Sbjct 10314 GATGGATTGTCCATTGAGCCAGAGTGGTACGTCCCCGTCCTTCCGATGGTTCTCGTCAAT 10373 Query 218983 GGTGCCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAGGAC 219042 || || ||||||| || || |||| |||||| ||||| || ||||| |||| Sbjct 10374 GGGGCTGATGGTATTGGCACCGGGTGGAGTACTTCGGTTCCTCGTTTTAATCCTCTGGAC 10433 Query 219043 ATCATTGACAACGTCAAGCGTCTCATATCTGG 219074 |||| || ||| ||||| || | | ||||| Sbjct 10434 CTCATCGAAAACATCAAGTGTGTTCTTTCTGG 10465 >seq2332 Length=5771 Score = 156 bits (172), Expect = 9e-33 Identities = 344/512 (67%), Gaps = 4/512 (1%) Strand=Plus/Minus Query 218565 GCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGC 218624 |||||| ||||| || || ||||| | |||||| ||||| ||||| || || | Sbjct 2430 GCGTTCGATTCCTTCTGTCGTTGATGGGTTGAAGCCAGGCCAGCGAAAGATTCTTTTCTC 2371 Query 218625 CGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATC 218684 |||||| || | || | || || ||||| |||||||| || ||||| || Sbjct 2370 ATGTTTCAAGAGGGATTTGAAGGAGGATATCAAGGTTGCTCAGTTGAGCGGCTATGTCTC 2311 Query 218685 CGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGC 218744 ||| | |||| || |||||||||||| || || ||| | || || || ||||| Sbjct 2310 CGAGAAGTCTGCGTATCATCACGGTGAGGCAAGCCTCCAGTCCACGATCGTTGGGATGGC 2251 Query 218745 ACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTC 218804 || | | ||| || ||||||||||||||| | || | || | |||||| ||||| | Sbjct 2250 TCAAAATTTTGTCGGAAGTAACAACATGAACCTCCTCCATCCAAGCGGTCAATTTGGAAC 2191 Query 218805 TCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCC 218864 ||||| ||||| | |||| ||| | ||| || ||| ||| || | | ||| Sbjct 2190 CCGTCTGCAAGGTGGGAGGGATTCTGCAAGT-CCACGT-TATATTTTCACACGCCTTGCC 2133 Query 218865 --CGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGAC 218922 |||| || | ||||| | | |||||| | | || || || ||||| ||| Sbjct 2132 AAAATGACTCGGTTGTTGTTCCCCAAAACGGATGATAAGATTCTCAACTACCTTGATGAC 2073 Query 218923 GATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAAT 218982 ||||| || |||||||| ||||||||||| |||| ||||| | | ||| | ||| Sbjct 2072 GATGGGATGTCTATTGAGCCAGAGTGGTATGTCCCTGTCCTTCCGATGGTTCTCATCAAT 2013 Query 218983 GGTGCCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAGGAC 219042 || || | ||||| || || |||| |||||| |||||| |||||||| ||| Sbjct 2012 GGAGCTGAGGGTATTGGCACTGGGTGGAGTACTTTGATTCCTCAATACAATCCTCTTGAC 1953 Query 219043 ATCATTGACAACGTCAAGCGTCTCATATCTGG 219074 | || || ||| ||||| || | | ||||| Sbjct 1952 CTGATCGAAAACATCAAGTGTGTTCTTTCTGG 1921 >seq6480 Length=1443 Score = 96.9 bits (106), Expect = 7e-15 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 439 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 384 >seq5599 Length=10534 Score = 96.9 bits (106), Expect = 7e-15 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 3819 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 3764 Score = 96.9 bits (106), Expect = 7e-15 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 4245 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 4190 Score = 96.9 bits (106), Expect = 7e-15 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 5017 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 4962 >seq4898 Length=1802 Score = 96.9 bits (106), Expect = 7e-15 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 225 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 280 >seq2450 Length=27238 Score = 96.9 bits (106), Expect = 7e-15 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 656 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 711 >seq2384 Length=3133 Score = 96.9 bits (106), Expect = 7e-15 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1887 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 1942 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 ||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||| Sbjct 142 TAGCTCAGTTGGTAGAGCGCTAGACTTTTAATCTAGTGGTCGCGGGTTCAAGCCCC 197 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 ||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||| Sbjct 411 TAGCTCAGTTGGTAGAGCGCTAGACTTTTAATCTAGTGGTCGCGGGTTCAAGCCCC 466 >seq2040 Length=43478 Score = 96.9 bits (106), Expect = 7e-15 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 7957 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 7902 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 ||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||| Sbjct 9989 TAGCTCAGTTGGTAGAGCGCTAGACTTTTAATCTAGTGGTCGCGGGTTCAAGCCCC 10044 >seq1810 Length=5350 Score = 96.9 bits (106), Expect = 7e-15 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 3830 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 3885 >seq1748 Length=7033 Score = 96.9 bits (106), Expect = 7e-15 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 893 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 838 >seq1082 Length=11652 Score = 96.9 bits (106), Expect = 7e-15 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 4471 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 4526 Score = 96.9 bits (106), Expect = 7e-15 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 4855 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 4910 Score = 96.9 bits (106), Expect = 7e-15 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 5080 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGCGGGTTCGAGCCCC 5025 >seq8260 Length=930 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 ||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||| Sbjct 59 TAGCTCAGTTGGTAGAGCGCTAGACTTTTAATCTAGTGGTCGCGGGTTCAAGCCCC 4 >seq5054 Length=1788 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 ||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||| Sbjct 1388 TAGCTCAGTTGGTAGAGCGCTAGACTTTTAATCTAGTGGTCGCGGGTTCAAGCCCC 1333 >seq1933 Length=3805 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 ||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||| Sbjct 1522 TAGCTCAGTTGGTAGAGCGCTAGACTTTTAATCTAGTGGTCGCGGGTTCAAGCCCC 1577 >seq1344 Length=8154 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 ||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||| Sbjct 5332 TAGCTCAGTTGGTAGAGCGCTAGACTTTTAATCTAGTGGTCGCGGGTTCAAGCCCC 5387 >seq1263 Length=7328 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 ||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||| Sbjct 3734 TAGCTCAGTTGGTAGAGCGCTAGACTTTTAATCTAGTGGTCGCGGGTTCAAGCCCC 3679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027713944915689