Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq7632 89.7 4e-13 >seq7632 Length=1044 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || |||| |||| ||||| || |||||||| ||||||||||| | Sbjct 672 CCTCCACGAAGGCGCAAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGAA 731 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| ||||||||||| ||||| || |||| || || || || || Sbjct 732 AGAGTG-CGACCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGG 790 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | || ||| ||||| ||||| ||||| | || | | | |||| ||| ||| Sbjct 791 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGGCTTGGATAGTGTCAGAAGACTCGAC 850 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || ||||| ||||| || | |||||||| ||||| ||||| Sbjct 851 CTCAAGGGTAATTGTCTTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397017255121858